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Computational Biophysics and Bioinformatics

Professor Emil Alexov Group

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Journal Articles by Others


E. Alexov and others
An Ensemble Approach to Predict the Pathogenicity of Synonymous Variants.
Genes, 11(9), 2020
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Y.-R. Lee, K. Khan, K. Armfield-Uhas, S. Srikanth, N. A. Thompson, M. Pardo, L. Yu, J. W. Norris, et al.
Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy
Nature communications, 11(1), 1-17, 2020
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R. Aprigliano, S. Bradamante, B. Mihaljevic, W. Wang, S. L. F. Martin, D. L. Bordin, M. Bosshard, N. P. Montaldo, et al.
Increased p53 signaling impairs neural differentiation causing HUWE1-promoted intellectual disabilities
bioRxiv, 2020
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C. Li, Z. Jia, A. Chakravorty, S. Pahari, Y. Peng, S. Basu, M. Koirala, S. K. Panday, et al.
DelPhi suite: New developments and review of functionalities
Journal of computational chemistry, 40(28), 2502-2508, 2019
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C. J. Spellicy, Y. Peng, L. Olewiler, S. S. Cathey, R. C. Rogers, D. Bartholomew, J. Johnson, E. Alexov, et al.
Three additional patients with EED-associated overgrowth: potential mutation hotspots identified?
Journal of human genetics, 64(6), 561-572, 2019
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C. J. Spellicy, J. Norris, R. Bend, C. Bupp, P. Mester, T. Reynolds, J. Dean, Y. Peng, et al.
Key apoptotic genes APAF1 and CASP9 implicated in recurrent folate-resistant neural tube defects
European Journal of Human Genetics, 26(3), 420-427, 2018
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K. Vaidyanathan, T. Niranjan, N. Selvan, C. F. Teo, M. May, S. Patel, B. Weatherly, C. Skinner, et al.
Identification and characterization of a missense mutation in the O-linked β-N-acetylglucosamine (O-GlcNAc) transferase gene that segregates with X-linked intellectual disability
Journal of Biological Chemistry, 292(21), 8948-8963, 2017
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K. Vaidyanathan, T. Niranjan, N. Selvan, C. F. Teo, M. May, S. Patel, B. Weatherly, C. Skinner, et al.
Identification and characterization of a missense mutation in the O-GlcNAc transferase gene that segregates with X-linked intellectual disability
J. Biol. Chem, 292, 8948-8963, 2017
RIS, BibTex
M. May, K.-S. Hwang, J. Miles, C. Williams, T. Niranjan, S. G. Kahler, P. Chiurazzi, K. Steindl, et al.
ZC4H2, an XLID gene, is required for the generation of a specific subset of CNS interneurons
Human molecular genetics, 24(17), 4848-4861, 2015
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Z. Zhang, V. Martiny, D. Lagorce, Y. Ikeguchi, E. Alexov, and others
Rational Design of Small-Molecule Stabilizers of Spermine Synthase Dimer by Virtual
2014
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L. Boccuto, K. Aoki, H. Flanagan-Steet, C.-F. Chen, X. Fan, F. Bartel, M. Petukh, A. Pittman, et al.
A mutation in a ganglioside biosynthetic enzyme, ST3GAL5, results in salt \& pepper syndrome, a neurocutaneous disorder with altered glycolipid and glycoprotein glycosylation
Human molecular genetics, 23(2), 418-433, 2014
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K. Takano, D. Liu, P. Tarpey, E. Gallant, A. Lam, S. Witham, E. Alexov, A. Chaubey, et al.
An X-linked channelopathy with cardiomegaly due to a CLIC2 mutation enhancing ryanodine receptor channel activity
Human molecular genetics, 21(20), 4497-4507, 2012
RIS, BibTex
E. Alexov, E. L. Mehler, N. Baker, A. M. Baptista, Y. Huang, F. Milletti, J. E. Nielsen, D. Farrell, et al.
Progress in the prediction of pKa values in proteins
Proteins: structure, function, and bioinformatics, 79(12), 3260-3275, 2011
RIS, BibTex
A. Pittman, R. Saul, A. Chaubey, E. Alexov, M. Tiemeyer, R. Steet, C. Schwartz, M. B\'en\'eteau, et al.
PMCID: PMC2695060.
Int Immunol, 22(7), 593-603, 2010
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N. Tanaka, S. Nakao, J. Chatellier, Y. Tani, T. Tada, S. Kunugi, F. Sicilia, B. Mattei, et al.
Proteins and Proteomics Cumulative Contents
Biochimica et Biophysica Acta, 1748, 233-234, 2005
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D. Petrey, Z. Xiang, C. L. Tang, L. Xie, M. Gimpelev, T. Mitros, C. S. Soto, S. Goldsmith-Fischman, et al.
Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling
Proteins: Structure, Function, and Bioinformatics, 53(6), 430-435, 2003
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Conference Papers


N. Selvan, K. Vaidyanathan, S. George, T. Niranjan, C. F. Teo, M. May, S. Patel, B. Weatherly, et al.
Identification and Characterization of Multiple Missense Mutations in the O-GlcNAc transferase gene that are causal for X-linked Intellectual Disability
GLYCOBIOLOGY, 2017
RIS, BibTex
K. Vaidyanathan, T. Niranjan, M. May, R. Rose, C. F. Teo, S. Prabakaran, R. Bridger, E. Alexov, et al.
Characterizing a missense mutation in O-GlcNAc transferase that segregates with disease in a family with X-linked Intellectual Disability
GLYCOBIOLOGY, 2013
RIS, BibTex
Z. Zhang, V. Martiny, D. Lagorce, E. Alexov, M. Miteva, and others
Snyder-Robinson Syndrome: Rescuing the Disease-Causing Effect of G56S mutant by Small Molecule Binding
APS March Meeting Abstracts, 2013
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V. Alexandrov, E. G. Alexov, M. Andrec, A. Apostolico, A. Bhattacharya, D. J. Brooks, R. L. Cai, A. Colasanti, et al.
Participant List
Proceedings of the Tsukuba Global Carbon Cycle Workshop--Global Environment Tsukuba'95: February 1-3, 1995, Tsukuba, Japan, 1995
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