Computational Biophysics and Bioinformatics

C. Li, M. McGowan, E. Alexov, and S. Zhao
A Newton-like iterative method implemented in the DelPhi for solving the nonlinear Poisson-Boltzmann equation [J]
Mathematical Biosciences and Engineering, 17(6), 6259-6277, 2020
RIS, BibTex

S. K. Panday, M. H. Shashikala, M. Koirala, S. Pahari, A. Chakvorty, Y. Peng, L. Li, Z. Jia, et al.
Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]
Living Journal of Computational Molecular Science, 1(2), 10841, 2019
RIS, BibTex

C. Li, Z. Jia, A. Chakravorty, S. Pahari, Y. Peng, S. Basu, M. Koirala, S. K. Panday, et al.
DelPhi suite: New developments and review of functionalities
Journal of computational chemistry, 40(28), 2502-2508, 2019
RIS, BibTex

B. Campbell, M. Petukh, E. Alexov, and C. Li
On the electrostatic properties of homodimeric proteins
Journal of Theoretical and Computational Chemistry, 13(3), 1440007, 2014
RIS, BibTex

L. Li, C. Li, and E. Alexov
On the modeling of polar component of solvation energy using smooth Gaussian-based dielectric function
Journal of Theoretical and Computational Chemistry, 13(3), 1440002, 2014
RIS, BibTex

C. Li, M. Petukh, L. Li, and E. Alexov
Multi-Level and Interleaved Poisson-Boltzmann (MLIPB) Method for Parallel Computing of the Electrostatics and its Application in Delphi
Biophysical Journal, 104(2), 507a, 2013
RIS, BibTex

L. Li, C. Li, and E. Alexov
Modeling Proteins and Small Molecules with Inhomogeneous Dielectric Function: Implementation in Delphi
Biophysical Journal, 104(2), 35a, 2013
RIS, BibTex

M. Petukh, C. Li, and E. Alexov
Predicting non-specifically bound ions: Application to BION webserver and beryllium disease
Biophysical Journal, 104(2), 506a, 2013
RIS, BibTex

C. Li, M. Petukh, L. Li, and E. Alexov
Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi
Journal of computational chemistry, 34(22), 1949-1960, 2013
RIS, BibTex

C. Li, L. Li, M. Petukh, and E. Alexov
Progress in developing Poisson-Boltzmann equation solvers
Computational and Mathematical Biophysics, 1(1), 42-62, 2013
RIS, BibTex

L. Li, C. Li, Z. Zhang, and E. Alexov
On the dielectric “constant” of proteins: smooth dielectric function for macromolecular modeling and its implementation in DelPhi
Journal of chemical theory and computation, 9(4), 2126-2136, 2013
RIS, BibTex

C. Li, M. Zhenirovskyy, L. Li, and E. Alexov
New Parallelized DelPhi: Fast and Efficient Poisson-Boltzmann Solver to Calculate Electrostatics of Large Supramolecular Structures
Biophysical Journal, 102(3), 270a, 2012
RIS, BibTex

N. Smith, B. Campbell, L. Li, C. Li, and E. Alexov
Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling
BMC structural biology, 12(1), 1-10, 2012
RIS, BibTex

M. Petukh, M. Zhenirovskyy, C. Li, L. Li, L. Wang, and E. Alexov
Predicting nonspecific ion binding using DelPhi
Biophysical journal, 102(12), 2885-2893, 2012
RIS, BibTex

C. Li, L. Li, J. Zhang, and E. Alexov
Highly efficient and exact method for parallelization of grid-based algorithms and its implementation in DelPhi
Journal of computational chemistry, 33(24), 1960-1966, 2012
RIS, BibTex

N. Smith, S. Witham, S. Sarkar, J. Zhang, L. Li, C. Li, and E. Alexov
DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol
Bioinformatics, 28(12), 1655-1657, 2012
RIS, BibTex

L. Li, C. Li, S. Sarkar, J. Zhang, S. Witham, Z. Zhang, L. Wang, N. Smith, et al.
DelPhi: a comprehensive suite for DelPhi software and associated resources
BMC biophysics, 5(1), 1-11, 2012
RIS, BibTex

Computational Biophysics and Bioinformatics

Professor Emil Alexov Group

Journal Articles by C. Li

Conference Papers