Computational Biophysics and Bioinformatics

E. Alexov and others
An Ensemble Approach to Predict the Pathogenicity of Synonymous Variants.
Genes, 11(9), 2020
RIS, BibTex

C. Li, M. McGowan, E. Alexov, and S. Zhao
A Newton-like iterative method implemented in the DelPhi for solving the nonlinear Poisson-Boltzmann equation [J]
Mathematical Biosciences and Engineering, 17(6), 6259-6277, 2020
RIS, BibTex

S. R. Ganakammal and E. Alexov
An Ensemble Approach to Predict the Pathogenicity of Synonymous Variants
Genes, 11(9), 1102, 2020
RIS, BibTex

G. Li, S. Pahari, A. K. Murthy, S. Liang, R. Fragoza, H. Yu, and E. Alexov
SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein--protein binding affinity
Bioinformatics, 2020
RIS, BibTex

M. Koirala and E. Alexov
Ab-initio binding of barnase--barstar with DelPhiForce steered Molecular Dynamics (DFMD) approach
Journal of Theoretical and Computational Chemistry, 19(4), 2050016, 2020
RIS, BibTex

Y.-R. Lee, K. Khan, K. Armfield-Uhas, S. Srikanth, N. A. Thompson, M. Pardo, L. Yu, J. W. Norris, et al.
Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy
Nature communications, 11(1), 1-17, 2020
RIS, BibTex

Y. Peng, R. Kelle, C. Little, E. Michonova, K. G. Kornev, and E. Alexov
pH-dependent interactions of Apolipophorin-III with a lipid disk
Journal of Computational Biophysics and Chemistry, 1-12, 2020
RIS, BibTex

S. R. Ganakammal, M. Koirala, B. Wu, and E. Alexov
In-silico analysis to identify the role of MEN1 missense mutations in breast cancer
Journal of Theoretical and Computational Chemistry, 19(6), 2041002, 2020
RIS, BibTex

S. Pahari, G. Li, A. K. Murthy, S. Liang, R. Fragoza, H. Yu, and E. Alexov
SAAMBE-3D: Predicting effect of mutations on protein--protein interactions
International journal of molecular sciences, 21(7), 2563, 2020
RIS, BibTex

A. Chakravorty, S. Panday, S. Pahari, S. Zhao, and E. Alexov
Capturing the Effects of Explicit Waters in Implicit Electrostatics Modeling: Qualitative Justification of Gaussian-Based Dielectric Models in DelPhi
Journal of chemical information and modeling, 60(4), 2229-2246, 2020
RIS, BibTex

M. Koirala and E. Alexov
Computational Analysis of Missense Mutations in Creatine Transporter Protein Associated with Creatine Deficiency Syndrome
Biophysical Journal, 118(3), 197a, 2020
RIS, BibTex

S. Wang, A. Lee, E. Alexov, and S. Zhao
A regularization approach for solving Poisson’s equation with singular charge sources and diffuse interfaces
Applied Mathematics Letters, 102, 106144, 2020
RIS, BibTex

M. Koirala and E. Alexov
Computational chemistry methods to investigate the effects caused by DNA variants linked with disease
Journal of Theoretical and Computational Chemistry, 19(6), 1930001, 2020
RIS, BibTex

Computational Biophysics and Bioinformatics

Professor Emil Alexov Group

2020