Computational Biophysics and Bioinformatics

C. Li, L. Li, and E. Alexov
Parallelized DelPhi: A multiprocessor Poisson-Boltzmann solver to calculate electrostatic energies of biological macromolecules
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012
RIS, BibTex

M. R. GUNNER and E. ALEXOV
CALCULATION OF ELECTROSTATIC FORCES
Molecular Modeling and Dynamics of Bioinorganic Systems, 41, 361, 2012
RIS, BibTex

C. Li, M. Zhenirovskyy, L. Li, and E. Alexov
New Parallelized DelPhi: Fast and Efficient Poisson-Boltzmann Solver to Calculate Electrostatics of Large Supramolecular Structures
Biophysical Journal, 102(3), 270a, 2012
RIS, BibTex

S. Witham and E. Alexov
Modeling CLIC2-RyR Interactions and the Effect of Disease Causing Mutation
Biophysical Journal, 102(3), 456a, 2012
RIS, BibTex

L. Li, L. Wang, C. Li, and E. Alexov
Effect of non-uniform protein dielectric constant on the electrostatic energy calculations
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012
RIS, BibTex

N. Smith, B. Campbell, L. Li, C. Li, and E. Alexov
Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling
BMC structural biology, 12(1), 1-10, 2012
RIS, BibTex

M. Petukh, M. Zhenirovskyy, C. Li, L. Li, L. Wang, and E. Alexov
Predicting nonspecific ion binding using DelPhi
Biophysical journal, 102(12), 2885-2893, 2012
RIS, BibTex

C. Li, L. Li, J. Zhang, and E. Alexov
Highly efficient and exact method for parallelization of grid-based algorithms and its implementation in DelPhi
Journal of computational chemistry, 33(24), 1960-1966, 2012
RIS, BibTex

N. Smith, S. Witham, S. Sarkar, J. Zhang, L. Li, C. Li, and E. Alexov
DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol
Bioinformatics, 28(12), 1655-1657, 2012
RIS, BibTex

Z. Zhang, L. Wang, Y. Gao, J. Zhang, M. Zhenirovskyy, and E. Alexov
Predicting folding free energy changes upon single point mutations
Bioinformatics, 28(5), 664-671, 2012
RIS, BibTex

K. Takano, D. Liu, P. Tarpey, E. Gallant, A. Lam, S. Witham, E. Alexov, A. Chaubey, et al.
An X-linked channelopathy with cardiomegaly due to a CLIC2 mutation enhancing ryanodine receptor channel activity
Human molecular genetics, 21(20), 4497-4507, 2012
RIS, BibTex

Z. Zhang, M. A. Miteva, L. Wang, and E. Alexov
Analyzing effects of naturally occurring missense mutations
Computational and mathematical methods in medicine, 2012, 2012
RIS, BibTex

L. Li, C. Li, S. Sarkar, J. Zhang, S. Witham, Z. Zhang, L. Wang, N. Smith, et al.
DelPhi: a comprehensive suite for DelPhi software and associated resources
BMC biophysics, 5(1), 1-11, 2012
RIS, BibTex

Computational Biophysics and Bioinformatics

Professor Emil Alexov Group

2012