Computational Biophysics and Bioinformatics

E. Alexov, K. Brock, and P. Kundrotas
Optimization of the electrostatic interactions in protein-protein complexes
APS March Meeting Abstracts, 2007
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S. Smith and L. Bost
Strategies For Increasing Response Rates
National Dropout Prevention Center for Students with Disabilities, Oregon, 2007
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E. G. Alexov
Modeling protein-protein interactions with continuum electrostatics
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2007
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P. Kundrotas and E. Alexov
Utilizing Profile-to-Profile Alignments for Predicting Protein-Protein Interactions
APS March Meeting Abstracts, 2007
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P. Kundrotas and E. Alexov
Predicting protein-protein interactions using non-gapped interacting residue segments
BIOPHYSICAL JOURNAL, 2007
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P. Kundrotas, P. Georgieva, A. Shosheva, P. Christova, and E. Alexov
BANMOKI: A searchable database of homology-based 3D models and their electrostatic properties of five bacterial nucleoside monophosphate kinase families
International journal of biological macromolecules, 41(1), 114-119, 2007
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M. A. Miteva, E. Alexov, and B. O. Villoutreix
Protein Structure Analysis Online
Current protocols in protein science, 50(1), 2-13, 2007
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P. Kundrotas and E. Alexov
Predicting interacting and interfacial residues using continuous sequence segments
International journal of biological macromolecules, 41(5), 615-623, 2007
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P. Kundrotas, P. Georgieva, A. Shosheva, P. Christova, and E. Alexov
Assessing the quality of the homology-modeled 3D structures from electrostatic standpoint: test on bacterial nucleoside monophosphate kinase families
Journal of bioinformatics and computational biology, 5(3), 693-715, 2007
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A. Isvoran, C. Craescu, and E. Alexov
Electrostatic control of the overall shape of calmodulin: numerical calculations
European Biophysics Journal, 36(3), 225-237, 2007
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A. Ofiteru, N. Bucurenci, E. Alexov, T. Bertrand, P. Briozzo, H. Munier-Lehmann, and A.-M. Gilles
Structural and functional consequences of single amino acid substitutions in the pyrimidine base binding pocket of Escherichia coli CMP kinase
The FEBS journal, 274(13), 3363-3373, 2007
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K. Brock, K. Talley, K. Coley, P. Kundrotas, and E. Alexov
Optimization of electrostatic interactions in protein-protein complexes
Biophysical journal, 93(10), 3340-3352, 2007
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P. J. Kundrotas and E. Alexov
PROTCOM: searchable database of protein complexes enhanced with domain--domain structures
Nucleic Acids Research, 35(1), D575-D579, 2007
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C. Bertonati, B. Honig, and E. Alexov
Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies
Biophysical journal, 92(6), 1891-1899, 2007
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C. L. Tang, E. Alexov, A. M. Pyle, and B. Honig
Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides
Journal of molecular biology, 366(5), 1475-1496, 2007
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Computational Biophysics and Bioinformatics

Professor Emil Alexov Group

2007