Computational Biophysics and Bioinformatics

M. Kosloff, E. Alexov, V. Y. Arshavsky, and B. Honig
Electrostatic and lipid anchor contributions to the interaction of transducin with membranes: mechanistic implications for activation and translocation
Journal of Biological Chemistry, 283(45), 31197-31207, 2008
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C. Bertonati, B. Honig, and E. Alexov
Poisson-Boltzmann calculations of nonspecific salt effects on protein-protein binding free energies
Biophysical journal, 92(6), 1891-1899, 2007
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C. L. Tang, E. Alexov, A. M. Pyle, and B. Honig
Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides
Journal of molecular biology, 366(5), 1475-1496, 2007
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J. Zhu, E. Alexov, and B. Honig
Comparative study of generalized Born models: Born radii and peptide folding
The Journal of Physical Chemistry B, 109(7), 3008-3022, 2005
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C. L. Tang, L. Xie, I. Y. Koh, S. Posy, E. Alexov, and B. Honig
On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profiles
Journal of molecular biology, 334(5), 1043-1062, 2003
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W. Rocchia, S. Sridharan, A. Nicholls, E. Alexov, A. Chiabrera, and B. Honig
Rapid grid-based construction of the molecular surface for both molecules and geometric objects: applications to the finite difference Poisson-Boltzmann method
J Comp Chem, 23, 128-137, 2002
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W. Rocchia, S. Sridharan, A. Nicholls, E. Alexov, A. Chiabrera, and B. Honig
Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects
Journal of computational chemistry, 23(1), 128-137, 2002
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W. Rocchia, E. Alexov, and B. Honig
Extending the applicability of the nonlinear Poisson-Boltzmann equation: Multiple dielectric constants and multivalent ions (vol 105B, pg 6507, 2001)
Journal of Physical Chemistry B, 105(28), 6754-6754, 2001
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W. Rocchia, E. Alexov, and B. Honig
ADDITIONS AND CORRECTIONS-Extending the Applicability of the Nonlinear Poisson-Boltzmann Equation: Multiple Dielectric Constants and Multivalent Ions
Journal of Physical Chemistry B-Condensed Phase, 105(28), 6754, 2001
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W. Rocchia, E. Alexov, and B. Honig
Extending the applicability of the nonlinear Poisson- Boltzmann equation: multiple dielectric constants and multivalent ions
The Journal of Physical Chemistry B, 105(28), 6507-6514, 2001
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Computational Biophysics and Bioinformatics

Professor Emil Alexov Group

Journal Articles by B. Honig

Conference Papers