Computational Biophysics and Bioinformatics

E. Alexov
Parallelization schemes for solving Poisson-Boltzmann equation via finite-difference method: Implementations in DelPhi and applications
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016
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B. Campbell, L. Li, and E. Alexov
Dielectric Properties of Biological Macromolecules and Biomolecule--Water Interfaces
Encyclopedia of Biocolloid and Biointerface Science 2V Set, 380-390, 2016
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Y. Peng and E. Alexov
Cofactors-loaded quaternary structure of lysine-specific demethylase 5C (KDM5C) protein: Computational model
Proteins: Structure, Function, and Bioinformatics, 84(12), 1797-1809, 2016
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A. Chakavorty, L. Li, and E. Alexov
Electrostatic component of binding energy: interpreting predictions from poisson--boltzmann equation and modeling protocols
Journal of computational chemistry, 37(28), 2495-2507, 2016
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L. Li, J. Alper, and E. Alexov
Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions
Scientific reports, 6(1), 1-12, 2016
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Y. Yang, T. G. Kucukkal, J. Li, E. Alexov, and W. Cao
Binding analysis of methyl-CpG binding domain of MeCP2 and Rett syndrome mutations
ACS chemical biology, 11(10), 2706-2715, 2016
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M. Petukh, L. Dai, and E. Alexov
SAAMBE: webserver to predict the charge of binding free energy caused by amino acids mutations
International journal of molecular sciences, 17(4), 547, 2016
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Y. Peng, J. Norris, C. Schwartz, and E. Alexov
Revealing the effects of missense mutations causing Snyder-Robinson syndrome on the stability and dimerization of spermine synthase
International journal of molecular sciences, 17(1), 77, 2016
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I. Getov, M. Petukh, and E. Alexov
SAAFEC: predicting the effect of single point mutations on protein folding free energy using a knowledge-modified MM/PBSA approach
International journal of molecular sciences, 17(4), 512, 2016
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L. Li, J. Alper, and E. Alexov
Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules
Scientific reports, 6(1), 1-12, 2016
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L. Wang, M. Zhang, and E. Alexov
DelPhiPKa web server: predicting p K a of proteins, RNAs and DNAs
Bioinformatics, 32(4), 614-615, 2016
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Y. Peng and E. Alexov
Investigating the linkage between disease-causing amino acid variants and their effect on protein stability and binding
Proteins: Structure, Function, and Bioinformatics, 84(2), 232-239, 2016
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Computational Biophysics and Bioinformatics

Professor Emil Alexov Group

2016