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Plain text
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RIS
,
BibTex
Journal Articles by S. Panday
S. Panday
and
E. Alexov
Protein–Protein Binding Free Energy Predictions with the MM/PBSA Approach Complemented with the Gaussian-Based Method for Entropy Estimation
ACS omega,
7
(13), 11057-11067, 2022
RIS
,
BibTex
G. Li
,
S. Panday
,
Y. Peng
, and
E. Alexov
SAMPDI-3D: predicting the effects of protein and DNA mutations on protein-DNA interactions.
Bioinformatics (Oxford, England), 2021
RIS
,
BibTex
G. Li
,
S. K. Panday
, and
E. Alexov
SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability
International Journal of Molecular Sciences,
22
(2), 606, 2021
RIS
,
BibTex
H. Shashikala
,
A. Chakravorty
,
S. K. Panday
, and
E. Alexov
BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics
International Journal of Molecular Sciences,
22
(1), 272, 2021
RIS
,
BibTex
G. Li
,
S. Panday
,
Y. Peng
, and
E. Alexov
SAMPDI-3D: predicting the effects of protein and DNA mutations on protein–DNA interactions
Bioinformatics,
37
(21), 3760-3765, 2021
RIS
,
BibTex
A. Chakravorty
,
S. Panday
,
S. Pahari
,
S. Zhao
, and
E. Alexov
Capturing the Effects of Explicit Waters in Implicit Electrostatics Modeling: Qualitative Justification of Gaussian-Based Dielectric Models in DelPhi
Journal of chemical information and modeling,
60
(4), 2229-2246, 2020
RIS
,
BibTex
S. K. Panday
,
M. H. Shashikala
,
A. Chakravorty
,
S. Zhao
, and
E. Alexov
Reproducing ensemble averaged electrostatics with Super-Gaussian-based smooth dielectric function: application to electrostatic component of binding energy of protein complexes
Communications in Information and Systems,
19
(4), 2019
RIS
,
BibTex
S. K. Panday
,
M. H. Shashikala
,
M. Koirala
,
S. Pahari
,
A. Chakvorty
,
Y. Peng
,
L. Li
,
Z. Jia
,
et al.
Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]
Living Journal of Computational Molecular Science,
1
(2), 10841, 2019
RIS
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BibTex
C. Li
,
Z. Jia
,
A. Chakravorty
,
S. Pahari
,
Y. Peng
,
S. Basu
,
M. Koirala
,
S. K. Panday
,
et al.
DelPhi suite: New developments and review of functionalities
Journal of computational chemistry,
40
(28), 2502-2508, 2019
RIS
,
BibTex
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