I. Shapovalov, P. Rimal, P. Poudel, V. Lewtas, M. Bell, S. K. Panday, B. J. Laight, D. Harper, S. Grieve, G. S. Baillie, K. Nouri, P. L. Davies, E. Alexov, and P. A. Greer. Quantification and structure-function analysis of calpain-1 and calpain-2 protease subunit interactions. Journal of Biological Chemistry, Elsevier BV, pages 110243, May 2025.

P. Poudel, I. Shapovalov, S. K. Panday, K. Nouri, P. L. Davies, P. A. Greer, and E. Alexov. In Silico Screening for Small Molecules to Alter Calpain Proteolysis through Modulating Conformation Changes Induced by Heterodimerization. Journal of Chemical Information and Modeling, American Chemical Society (ACS), May 2025.

A. Y. Chen, S. K. Panday, K. Ri, E. Alexov, B. R. Brooks, and A. Damjanovic. PKAD-R: Curated, Redesigned and Expanded Database of Experimental pKa Values in Proteins. Journal of Computational Biophysics and Chemistry, World Scientific Pub Co Pte Ltd, pages 1–15, April 2025.

P. Poudel, M. A. Miteva, and E. Alexov. Strategies for in Silico Drug Discovery to Modulate Macromolecular Interactions Altered by Mutations. Frontiers in Bioscience-Landmark, IMR Press, volume 30, issue 4, April 2025.

P. Turina, M. Petrosino, C. A. E. Sandoval, L. Novak, A. Pasquo, E. Alexov, M. A. Alladin, D. B. Ascher, G. Babbi, C. Bakolitsa, R. Casadio, J. Cheng, P. Fariselli, L. Folkman, A. Kamandula, P. Katsonis, M. Li, D. Li, O. Lichtarge, S. Mahmud, P. L. Martelli, D. Pal, S. K. Panday, D. E. V. Pires, S. Portelli, F. Pucci, C. H. M. Rodrigues, M. Rooman, C. Savojardo, M. Schwersensky, Y. Shen, A. V. Strokach, Y. Sun, J. Woo, P. Radivojac, S. E. Brenner, R. Chiaraluce, V. Consalvi, and E. Capriotti. Assessing the predicted impact of single amino acid substitutions in MAPK proteins for CAGI6 challenges. Human Genetics, Springer Science and Business Media LLC, volume 144, issue 23, pages 265–280, February 2025.

P. Rimal, S. Paul, S. Panday, and E. Alexov. Further Development of SAMPDI-3D: A Machine Learning Method for Predicting Binding Free Energy Changes Caused by Mutations in Either Protein or DNA. Genes, MDPI AG, volume 16, issue 1, pages 101, January 2025.

E. Alexov. Approaches Of Computational Biophysics And Chemistry In Molecular Biology. World Scientific, 2025.

M. Koirala and E. Alexov. Dynamics (DFMD) Approach. Approaches Of Computational Biophysics And Chemistry In Molecular Biology, World Scientific, pages 79, 2025.