@article{Shapovalov2025,
  author = "I. Shapovalov and P. Rimal and P. Poudel and V. Lewtas and M. Bell and S. K. Panday and B. J. Laight and D. Harper and S. Grieve and G. S. Baillie and K. Nouri and P. L. Davies and E. Alexov and P. A. Greer",
  title = "Quantification and structure-function analysis of calpain-1 and calpain-2 protease subunit interactions",
  year = 2025,
  journal = "Journal of Biological Chemistry",
  publisher = "Elsevier BV",
  pages = "110243",
  month = "May",
  doi = "10.1016/j.jbc.2025.110243",
  url = "http://dx.doi.org/10.1016/j.jbc.2025.110243"
}


@article{Poudel2025,
  author = "P. Poudel and I. Shapovalov and S. K. Panday and K. Nouri and P. L. Davies and P. A. Greer and E. Alexov",
  title = "In Silico Screening for Small Molecules to Alter Calpain Proteolysis through Modulating Conformation Changes Induced by Heterodimerization",
  year = 2025,
  journal = "Journal of Chemical Information and Modeling",
  publisher = "American Chemical Society (ACS)",
  month = "May",
  doi = "10.1021/acs.jcim.5c00258",
  url = "http://dx.doi.org/10.1021/acs.jcim.5c00258"
}


@article{Chen2025,
  author = "A. Y. Chen and S. K. Panday and K. Ri and E. Alexov and B. R. Brooks and A. Damjanovic",
  title = "PKAD-R: Curated, Redesigned and Expanded Database of Experimental pKa Values in Proteins",
  year = 2025,
  journal = "Journal of Computational Biophysics and Chemistry",
  publisher = "World Scientific Pub Co Pte Ltd",
  pages = "1–15",
  month = "Apr",
  doi = "10.1142/s2737416525500164",
  url = "http://dx.doi.org/10.1142/S2737416525500164"
}


@article{Poudel2025,
  author = "P. Poudel and M. A. Miteva and E. Alexov",
  title = "Strategies for in Silico Drug Discovery to Modulate Macromolecular Interactions Altered by Mutations",
  year = 2025,
  journal = "Frontiers in Bioscience-Landmark",
  publisher = "IMR Press",
  volume = 30,
  number = 4,
  month = "Apr",
  doi = "10.31083/fbl26339",
  url = "http://dx.doi.org/10.31083/FBL26339"
}


@article{Turina2025,
  author = "P. Turina and M. Petrosino and C. A. E. Sandoval and L. Novak and A. Pasquo and E. Alexov and M. A. Alladin and D. B. Ascher and G. Babbi and C. Bakolitsa and R. Casadio and J. Cheng and P. Fariselli and L. Folkman and A. Kamandula and P. Katsonis and M. Li and D. Li and O. Lichtarge and S. Mahmud and P. L. Martelli and D. Pal and S. K. Panday and D. E. V. Pires and S. Portelli and F. Pucci and C. H. M. Rodrigues and M. Rooman and C. Savojardo and M. Schwersensky and Y. Shen and A. V. Strokach and Y. Sun and J. Woo and P. Radivojac and S. E. Brenner and R. Chiaraluce and V. Consalvi and E. Capriotti",
  title = "Assessing the predicted impact of single amino acid substitutions in MAPK proteins for CAGI6 challenges",
  year = 2025,
  journal = "Human Genetics",
  publisher = "Springer Science and Business Media LLC",
  volume = 144,
  number = 23,
  pages = "265–280",
  month = "Feb",
  doi = "10.1007/s00439-024-02724-8",
  url = "http://dx.doi.org/10.1007/s00439-024-02724-8"
}


@article{Rimal2025,
  author = "P. Rimal and S. Paul and S. Panday and E. Alexov",
  title = "Further Development of SAMPDI-3D: A Machine Learning Method for Predicting Binding Free Energy Changes Caused by Mutations in Either Protein or DNA",
  year = 2025,
  journal = "Genes",
  publisher = "MDPI AG",
  volume = 16,
  number = 1,
  pages = "101",
  month = "Jan",
  doi = "10.3390/genes16010101",
  url = "http://dx.doi.org/10.3390/genes16010101"
}


@book{alexov2025approaches,
  author = "E. Alexov",
  title = "Approaches Of Computational Biophysics And Chemistry In Molecular Biology",
  year = 2025,
  publisher = "World Scientific"
}


@article{koirala2025dynamics,
  author = "M. Koirala and E. Alexov",
  title = "Dynamics (DFMD) Approach",
  year = 2025,
  journal = "Approaches Of Computational Biophysics And Chemistry In Molecular Biology",
  publisher = "World Scientific",
  pages = "79"
}