
@article{li2020newton,
  author = "C. Li and M. McGowan and E. Alexov and S. Zhao",
  title = "A Newton-like iterative method implemented in the DelPhi for solving the nonlinear Poisson-Boltzmann equation [J]",
  year = 2020,
  journal = "Mathematical Biosciences and Engineering",
  volume = 17,
  number = 6,
  pages = "6259-6277"
}


@article{panday2019modeling,
  author = "S. K. Panday and M. H. Shashikala and M. Koirala and S. Pahari and A. Chakvorty and Y. Peng and L. Li and Z. Jia and C. Li and E. Alexov",
  title = "Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]",
  year = 2019,
  journal = "Living Journal of Computational Molecular Science",
  publisher = "University of Colorado Boulder",
  volume = 1,
  number = 2,
  pages = "10841"
}


@article{li2019delphi,
  author = "C. Li and Z. Jia and A. Chakravorty and S. Pahari and Y. Peng and S. Basu and M. Koirala and S. K. Panday and M. Petukh and L. Li and others",
  title = "DelPhi suite: New developments and review of functionalities",
  year = 2019,
  journal = "Journal of computational chemistry",
  publisher = "John Wiley \& Sons, Inc. Hoboken, USA",
  volume = 40,
  number = 28,
  pages = "2502-2508"
}


@article{campbell2014electrostatic,
  author = "B. Campbell and M. Petukh and E. Alexov and C. Li",
  title = "On the electrostatic properties of homodimeric proteins",
  year = 2014,
  journal = "Journal of Theoretical and Computational Chemistry",
  publisher = "World Scientific Publishing Company",
  volume = 13,
  number = 3,
  pages = "1440007"
}


@article{li2014modeling,
  author = "L. Li and C. Li and E. Alexov",
  title = "On the modeling of polar component of solvation energy using smooth Gaussian-based dielectric function",
  year = 2014,
  journal = "Journal of Theoretical and Computational Chemistry",
  publisher = "World Scientific Publishing Company",
  volume = 13,
  number = 3,
  pages = "1440002"
}


@inproceedings{li2013smooth,
  author = "L. Li and C. Li and E. Alexov",
  title = "Smooth dielectric function for modeling electrostatics in biological macromolecules",
  year = 2013,
  booktitle = "ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY",
  volume = 246
}


@article{li2013multi,
  author = "C. Li and M. Petukh and L. Li and E. Alexov",
  title = "Multi-Level and Interleaved Poisson-Boltzmann (MLIPB) Method for Parallel Computing of the Electrostatics and its Application in Delphi",
  year = 2013,
  journal = "Biophysical Journal",
  publisher = "Elsevier",
  volume = 104,
  number = 2,
  pages = "507a"
}


@article{li2013modeling,
  author = "L. Li and C. Li and E. Alexov",
  title = "Modeling Proteins and Small Molecules with Inhomogeneous Dielectric Function: Implementation in Delphi",
  year = 2013,
  journal = "Biophysical Journal",
  publisher = "Elsevier",
  volume = 104,
  number = 2,
  pages = "35a"
}


@article{petukh2013predicting,
  author = "M. Petukh and C. Li and E. Alexov",
  title = "Predicting non-specifically bound ions: Application to BION webserver and beryllium disease",
  year = 2013,
  journal = "Biophysical Journal",
  publisher = "Elsevier",
  volume = 104,
  number = 2,
  pages = "506a"
}


@article{li2013continuous,
  author = "C. Li and M. Petukh and L. Li and E. Alexov",
  title = "Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi",
  year = 2013,
  journal = "Journal of computational chemistry",
  publisher = "Wiley Online Library",
  volume = 34,
  number = 22,
  pages = "1949-1960"
}


@article{li2013progress,
  author = "C. Li and L. Li and M. Petukh and E. Alexov",
  title = "Progress in developing Poisson-Boltzmann equation solvers",
  year = 2013,
  journal = "Computational and Mathematical Biophysics",
  publisher = "De Gruyter",
  volume = 1,
  number = 1,
  pages = "42-62"
}


@article{li2013dielectric,
  author = "L. Li and C. Li and Z. Zhang and E. Alexov",
  title = "On the dielectric “constant” of proteins: smooth dielectric function for macromolecular modeling and its implementation in DelPhi",
  year = 2013,
  journal = "Journal of chemical theory and computation",
  publisher = "American Chemical Society",
  volume = 9,
  number = 4,
  pages = "2126-2136"
}


@inproceedings{li2012parallelized,
  author = "C. Li and L. Li and E. Alexov",
  title = "Parallelized DelPhi: A multiprocessor Poisson-Boltzmann solver to calculate electrostatic energies of biological macromolecules",
  year = 2012,
  booktitle = "ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY",
  volume = 244
}


@article{li2012new,
  author = "C. Li and M. Zhenirovskyy and L. Li and E. Alexov",
  title = "New Parallelized DelPhi: Fast and Efficient Poisson-Boltzmann Solver to Calculate Electrostatics of Large Supramolecular Structures",
  year = 2012,
  journal = "Biophysical Journal",
  publisher = "Elsevier",
  volume = 102,
  number = 3,
  pages = "270a"
}


@inproceedings{li2012effect,
  author = "L. Li and L. Wang and C. Li and E. Alexov",
  title = "Effect of non-uniform protein dielectric constant on the electrostatic energy calculations",
  year = 2012,
  booktitle = "ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY",
  volume = 244
}


@article{smith2012protein,
  author = "N. Smith and B. Campbell and L. Li and C. Li and E. Alexov",
  title = "Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling",
  year = 2012,
  journal = "BMC structural biology",
  publisher = "BioMed Central",
  volume = 12,
  number = 1,
  pages = "1-10"
}


@article{petukh2012predicting,
  author = "M. Petukh and M. Zhenirovskyy and C. Li and L. Li and L. Wang and E. Alexov",
  title = "Predicting nonspecific ion binding using DelPhi",
  year = 2012,
  journal = "Biophysical journal",
  publisher = "Elsevier",
  volume = 102,
  number = 12,
  pages = "2885-2893"
}


@article{li2012highly,
  author = "C. Li and L. Li and J. Zhang and E. Alexov",
  title = "Highly efficient and exact method for parallelization of grid-based algorithms and its implementation in DelPhi",
  year = 2012,
  journal = "Journal of computational chemistry",
  publisher = "Wiley Online Library",
  volume = 33,
  number = 24,
  pages = "1960-1966"
}


@article{smith2012delphi,
  author = "N. Smith and S. Witham and S. Sarkar and J. Zhang and L. Li and C. Li and E. Alexov",
  title = "DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol",
  year = 2012,
  journal = "Bioinformatics",
  publisher = "Oxford University Press",
  volume = 28,
  number = 12,
  pages = "1655-1657"
}


@article{li2012delphi,
  author = "L. Li and C. Li and S. Sarkar and J. Zhang and S. Witham and Z. Zhang and L. Wang and N. Smith and M. Petukh and E. Alexov",
  title = "DelPhi: a comprehensive suite for DelPhi software and associated resources",
  year = 2012,
  journal = "BMC biophysics",
  publisher = "BioMed Central",
  volume = 5,
  number = 1,
  pages = "1-11"
}


