Building file: ../src/app/app_delphi.cpp
Invoking: GCC C++ Compiler
g++ -O3 -c -Wall -std=c++11 -o"src/app/app_delphi.o" "../src/app/app_delphi.cpp"
In file included from ../src/app/app_delphi.cpp:39:
../src/app/../space/space.h: In constructor 'CDelphiSpace::CDelphiSpace(std::shared_ptr<IDataContainer>, std::shared_ptr<CTimer>)':
../src/app/../space/space.h:54:27: warning: 'CDelphiSpace::repsout' will be initialized after [-Wreorder]
   54 |     const delphi_real&    repsout;                   // repsout
      |                           ^~~~~~~
../src/app/../space/space.h:53:27: warning:   'const delphi::delphi_real& CDelphiSpace::repsgap' [-Wreorder]
   53 |     const delphi_real&    repsgap;                   // repsgap
      |                           ^~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:59:24: warning: 'CDelphiSpace::repsout2' will be initialized after [-Wreorder]
   59 |     const delphi_real& repsout2;
      |                        ^~~~~~~~
../src/app/../space/space.h:55:27: warning:   'const delphi::delphi_real& CDelphiSpace::repsin' [-Wreorder]
   55 |     const delphi_real&    repsin;                    // repsin
      |                           ^~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:71:17: warning: 'CDelphiSpace::isch' will be initialized after [-Wreorder]
   71 |     const bool& isch;
      |                 ^~~~
../src/app/../space/space.h:57:24: warning:   'const delphi::delphi_real& CDelphiSpace::fEpsOut' [-Wreorder]
   57 |     const delphi_real& fEpsOut;
      |                        ^~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:57:24: warning: 'CDelphiSpace::fEpsOut' will be initialized after [-Wreorder]
   57 |     const delphi_real& fEpsOut;
      |                        ^~~~~~~
../src/app/../space/space.h:56:24: warning:   'const delphi::delphi_real& CDelphiSpace::fDebyeLength' [-Wreorder]
   56 |     const delphi_real& fDebyeLength;
      |                        ^~~~~~~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:133:17: warning: 'CDelphiSpace::iGaussianPowerMult' will be initialized after [-Wreorder]
  133 |     const int&  iGaussianPowerMult;
      |                 ^~~~~~~~~~~~~~~~~~
../src/app/../space/space.h:78:27: warning:   'const delphi::delphi_integer& CDelphiSpace::iNMedia' [-Wreorder]
   78 |     const delphi_integer& iNMedia;
      |                           ^~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:267:24: warning: 'CDelphiSpace::global_cOldMid' will be initialized after [-Wreorder]
  267 |     SGrid<delphi_real> global_cOldMid;
      |                        ^~~~~~~~~~~~~~
../src/app/../space/space.h:82:24: warning:   'const delphi::delphi_real& CDelphiSpace::fIonStrenth' [-Wreorder]
   82 |     const delphi_real& fIonStrenth;
      |                        ^~~~~~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:126:23: warning: 'CDelphiSpace::delphipdb' will be initialized after [-Wreorder]
  126 |     vector <CAtomPdb> delphipdb;                     //delphipdb
      |                       ^~~~~~~~~
../src/app/../space/space.h:92:18: warning:   'delphi::delphi_real& CDelphiSpace::rdmx' [-Wreorder]
   92 |     delphi_real& rdmx;                               // rdmx
      |                  ^~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:98:25: warning: 'CDelphiSpace::cMax' will be initialized after [-Wreorder]
   98 |     SGrid<delphi_real> &cMax;
      |                         ^~~~
../src/app/../space/space.h:91:21: warning:   'delphi::delphi_integer& CDelphiSpace::iBoundNum' [-Wreorder]
   91 |     delphi_integer &iBoundNum;                       // ibnum
      |                     ^~~~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:194:20: warning: 'CDelphiSpace::zetaSurfMap_v' will be initialized after [-Wreorder]
  194 |     vector <char>& zetaSurfMap_v;                    //zetaSurfMap
      |                    ^~~~~~~~~~~~~
../src/app/../space/space.h:192:10: warning:   'int& CDelphiSpace::zetaOn' [-Wreorder]
  192 |     int& zetaOn;
      |          ^~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:220:17: warning: 'CDelphiSpace::bDoMMPBSA' will be initialized after [-Wreorder]
  220 |     const bool& bDoMMPBSA;
      |                 ^~~~~~~~~
../src/app/../space/space.h:108:21: warning:   'std::vector<char>& CDelphiSpace::bDebMap_v' [-Wreorder]
  108 |     vector <char>&  bDebMap_v;                       //idebmap
      |                     ^~~~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:124:32: warning: 'CDelphiSpace::atsurf_v' will be initialized after [-Wreorder]
  124 |     vector < delphi_integer >& atsurf_v;
      |                                ^~~~~~~~
../src/app/../space/space.h:123:37: warning:   'std::vector<SGrid<double> >& CDelphiSpace::scsnor_v' [-Wreorder]
  123 |     vector < SGrid <delphi_real> >& scsnor_v;
      |                                     ^~~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:125:32: warning: 'CDelphiSpace::atndx_v' will be initialized after [-Wreorder]
  125 |     vector < delphi_integer >& atndx_v;
      |                                ^~~~~~~
../src/app/../space/space.h:117:37: warning:   'std::vector<SGrid<double> >& CDelphiSpace::chgpos_v' [-Wreorder]
  117 |     vector < SGrid <delphi_real> >& chgpos_v;
      |                                     ^~~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
../src/app/../space/space.h:265:12: warning: 'CDelphiSpace::my_id' will be initialized after [-Wreorder]
  265 |     size_t my_id;
      |            ^~~~~
../src/app/../space/space.h:119:30: warning:   'std::vector<int>& CDelphiSpace::nqgrdtonqass_v' [-Wreorder]
  119 |     vector <delphi_integer>& nqgrdtonqass_v;
      |                              ^~~~~~~~~~~~~~
../src/app/../space/space.h:303:5: warning:   when initialized here [-Wreorder]
  303 |     CDelphiSpace(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |     ^~~~~~~~~~~~
In file included from ../src/app/app_delphi.cpp:40:
../src/app/../solver/solver.h: In constructor 'CDelphiSolver::CDelphiSolver(std::shared_ptr<IDataContainer>, std::shared_ptr<CTimer>)':
../src/app/../solver/solver.h:138:11: warning: 'CDelphiSolver::bDbOut' will be initialized after [-Wreorder]
  138 |     bool& bDbOut;                                                       // idbwrt
      |           ^~~~~~
../src/app/../solver/solver.h:77:17: warning:   'const bool& CDelphiSolver::bGridCrgOut' [-Wreorder]
   77 |     const bool& bGridCrgOut;                                            // iwgcrg
      |                 ^~~~~~~~~~~
../src/app/../solver/solver.h:277:5: warning:   when initialized here [-Wreorder]
  277 |     CDelphiSolver(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../solver/solver.h:126:26: warning: 'CDelphiSolver::gaussianDensityMap' will be initialized after [-Wreorder]
  126 |     vector<delphi_real>& gaussianDensityMap;                            // gaussianDensityMap(igrid,igrid,igrid)
      |                          ^~~~~~~~~~~~~~~~~~
../src/app/../solver/solver.h:84:24: warning:   'const delphi::delphi_real& CDelphiSolver::fEpsOut' [-Wreorder]
   84 |     const delphi_real& fEpsOut;                                         // epsout
      |                        ^~~~~~~
../src/app/../solver/solver.h:277:5: warning:   when initialized here [-Wreorder]
  277 |     CDelphiSolver(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../solver/solver.h:124:18: warning: 'CDelphiSolver::prgbDielecMap' will be initialized after [-Wreorder]
  124 |     vector<char> prgbDielecMap;                                         // idebmap(igrid,igrid,igrid)
      |                  ^~~~~~~~~~~~~
../src/app/../solver/solver.h:114:27: warning:   'const delphi::delphi_integer& CDelphiSolver::iCrg2GridNum' [-Wreorder]
  114 |     const delphi_integer& iCrg2GridNum;                                 // nqgrd
      |                           ^~~~~~~~~~~~
../src/app/../solver/solver.h:277:5: warning:   when initialized here [-Wreorder]
  277 |     CDelphiSolver(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../solver/solver.h:146:21: warning: 'CDelphiSolver::iCrgBndyGridNum' will be initialized after [-Wreorder]
  146 |     delphi_integer& iCrgBndyGridNum;                                    // ibc
      |                     ^~~~~~~~~~~~~~~
../src/app/../solver/solver.h:144:26: warning:   'std::vector<double>& CDelphiSolver::prgfGridCrg' [-Wreorder]
  144 |     vector<delphi_real>& prgfGridCrg;                                   // gchrg(icount1b)
      |                          ^~~~~~~~~~~
../src/app/../solver/solver.h:277:5: warning:   when initialized here [-Wreorder]
  277 |     CDelphiSolver(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
In file included from ../src/app/app_delphi.cpp:41:
../src/app/../energy/energy.h: In constructor 'CDelphiEnergy::CDelphiEnergy(std::shared_ptr<IDataContainer>, std::shared_ptr<CTimer>)':
../src/app/../energy/energy.h:118:11: warning: 'CDelphiEnergy::bEngOut' will be initialized after [-Wreorder]
  118 |     bool& bEngOut;
      |           ^~~~~~~
../src/app/../energy/energy.h:53:17: warning:   'const bool& CDelphiEnergy::bSurfEngOut' [-Wreorder]
   53 |     const bool& bSurfEngOut;
      |                 ^~~~~~~~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../energy/energy.h:90:26: warning: 'CDelphiEnergy::prgfGridCrg' will be initialized after [-Wreorder]
   90 |     vector<delphi_real>& prgfGridCrg;
      |                          ^~~~~~~~~~~
../src/app/../energy/energy.h:89:37: warning:   'std::vector<SGrid<int> >& CDelphiEnergy::prgigGridCrgPose' [-Wreorder]
   89 |     vector<SGrid<delphi_integer> >& prgigGridCrgPose;
      |                                     ^~~~~~~~~~~~~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../energy/energy.h:89:37: warning: 'CDelphiEnergy::prgigGridCrgPose' will be initialized after [-Wreorder]
   89 |     vector<SGrid<delphi_integer> >& prgigGridCrgPose;
      |                                     ^~~~~~~~~~~~~~~~
../src/app/../energy/energy.h:79:39: warning:   'std::vector<SGridValue<double> >& CDelphiEnergy::prggvAtomicCrg' [-Wreorder]
   79 |     vector<SGridValue<delphi_real> >& prggvAtomicCrg;
      |                                       ^~~~~~~~~~~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../energy/energy.h:97:27: warning: 'CDelphiEnergy::iObjectNum' will be initialized after [-Wreorder]
   97 |     const delphi_integer& iObjectNum;
      |                           ^~~~~~~~~~
../src/app/../energy/energy.h:80:32: warning:   'const std::vector<double>& CDelphiEnergy::rgfProbeRadius' [-Wreorder]
   80 |     const vector<delphi_real>& rgfProbeRadius;               // radprb
      |                                ^~~~~~~~~~~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../energy/energy.h:102:31: warning: 'CDelphiEnergy::prgdgvCrgBndyGrid' will be initialized after [-Wreorder]
  102 |     vector<SDoubleGridValue>& prgdgvCrgBndyGrid;
      |                               ^~~~~~~~~~~~~~~~~
../src/app/../energy/energy.h:101:23: warning:   'std::vector<CAtomPdb>& CDelphiEnergy::prgapAtomPdb' [-Wreorder]
  101 |     vector<CAtomPdb>& prgapAtomPdb;
      |                       ^~~~~~~~~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../energy/energy.h:143:33: warning: 'CDelphiEnergy::edges_v' will be initialized after [-Wreorder]
  143 |     vector< iComplex >&         edges_v;
      |                                 ^~~~~~~
../src/app/../energy/energy.h:142:33: warning:   'delphi::delphi_real CDelphiEnergy::KConstant' [-Wreorder]
  142 |     delphi_real                 KConstant;
      |                                 ^~~~~~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../energy/energy.h:142:33: warning: 'CDelphiEnergy::KConstant' will be initialized after [-Wreorder]
  142 |     delphi_real                 KConstant;
      |                                 ^~~~~~~~~
../src/app/../energy/energy.h:72:17: warning:   'const bool& CDelphiEnergy::bDoMMPBSA' [-Wreorder]
   72 |     const bool& bDoMMPBSA;
      |                 ^~~~~~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
../src/app/../energy/energy.h:129:18: warning: 'CDelphiEnergy::ergsgaussian' will be initialized after [-Wreorder]
  129 |     delphi_real& ergsgaussian;
      |                  ^~~~~~~~~~~~
../src/app/../energy/energy.h:125:18: warning:   'delphi::delphi_real& CDelphiEnergy::erglj' [-Wreorder]
  125 |     delphi_real& erglj;
      |                  ^~~~~
../src/app/../energy/energy.h:199:5: warning:   when initialized here [-Wreorder]
  199 |     CDelphiEnergy(shared_ptr<IDataContainer> pdc, shared_ptr<CTimer> pt) :
      |     ^~~~~~~~~~~~~
In file included from ../src/app/app_delphi.cpp:42:
../src/app/../site/site.h: In constructor 'CSite::CSite(std::shared_ptr<IDataContainer>, std::shared_ptr<CTimer>)':
../src/app/../site/site.h:131:29: warning: 'CSite::surf_grid_index_v' will be initialized after [-Wreorder]
  131 |       vector <delphi_real>& surf_grid_index_v;
      |                             ^~~~~~~~~~~~~~~~~
../src/app/../site/site.h:91:29: warning:   'const delphi::delphi_integer& CSite::iDielecBndySum' [-Wreorder]
   91 |       const delphi_integer& iDielecBndySum;                    // icount2b
      |                             ^~~~~~~~~~~~~~
../src/app/../site/site.h:176:7: warning:   when initialized here [-Wreorder]
  176 |       CSite(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |       ^~~~~
../src/app/../site/site.h:118:22: warning: 'CSite::bCommFRCIn' will be initialized after [-Wreorder]
  118 |       const bool&    bCommFRCIn;
      |                      ^~~~~~~~~~
../src/app/../site/site.h:111:29: warning:   'std::vector<double>& CSite::prgfPhiMap' [-Wreorder]
  111 |       vector<delphi_real>&  prgfPhiMap;                        // phimap
      |                             ^~~~~~~~~~
../src/app/../site/site.h:176:7: warning:   when initialized here [-Wreorder]
  176 |       CSite(shared_ptr<IDataContainer> pdc,shared_ptr<CTimer> pt):
      |       ^~~~~
../src/app/app_delphi.cpp: In function 'int main(int, char**)':
../src/app/app_delphi.cpp:179:20: error: type 'class std::unique_ptr<CTimer>' argument given to 'delete', expected pointer
  179 |             delete spaceTimer;
      |                    ^~~~~~~~~~
../src/app/app_delphi.cpp:259:20: error: type 'class std::unique_ptr<CTimer>' argument given to 'delete', expected pointer
  259 |             delete solverTimer;
      |                    ^~~~~~~~~~~
../src/app/app_delphi.cpp:296:20: error: type 'class std::unique_ptr<CTimer>' argument given to 'delete', expected pointer
  296 |             delete energyTimer;
      |                    ^~~~~~~~~~~
../src/app/app_delphi.cpp:497:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<CAtomPdb>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  497 |             for (int idx = 0; idx < vctapAtomPdb.size(); idx++)
      |                               ~~~~^~~~~~~~~~~~~~~~~~~~~
../src/app/app_delphi.cpp:422:46: warning: unused variable 'vctefExtrema' [-Wunused-variable]
  422 |             vector< SExtrema<delphi_real> >& vctefExtrema(pDataContainer->getKey_Ref< vector< SExtrema<delphi_real> > >("limobject"));
      |                                              ^~~~~~~~~~~~
make: *** [src/app/subdir.mk:20: src/app/app_delphi.o] Error 1
