A. Das, M. Gur, I. Bahar, and B. Roux. A simple coarse-grained model to map the transition pathway between two stable conformations using the anisotropic elastic network model. Biophysical Journal, Elsevier, volume 104, issue 2, pages 35a-36a, 2013.

E. Alexov. Electrostatics and polarization effects in biophysical chemistry: In silico, in vitro, and in vivo. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 246, 2013.

M. Petukh, A. Panchenko, and E. Alexov. Electrostatics plays significant role in changes of the protein-protein affinity due to missense mutations. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 246, 2013.

L. Li, C. Li, and E. Alexov. Smooth dielectric function for modeling electrostatics in biological macromolecules. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 246, 2013.

C. Li, M. Petukh, L. Li, and E. Alexov. Multi-Level and Interleaved Poisson-Boltzmann (MLIPB) Method for Parallel Computing of the Electrostatics and its Application in Delphi. Biophysical Journal, Elsevier, volume 104, issue 2, pages 507a, 2013.

K. Vaidyanathan, T. Niranjan, M. May, R. Rose, C. F. Teo, S. Prabakaran, R. Bridger, E. Alexov, T. Wang, C. Schwartz, and others. Characterizing a missense mutation in O-GlcNAc transferase that segregates with disease in a family with X-linked Intellectual Disability. GLYCOBIOLOGY, volume 23, issue 11, pages 1334-1335, 2013.

Z. Zhang, V. Martiny, D. Lagorce, E. Alexov, M. Miteva, and others. Snyder-Robinson Syndrome: Rescuing the Disease-Causing Effect of G56S mutant by Small Molecule Binding. APS March Meeting Abstracts, volume 2013, pages G45-005, 2013.

L. Li, C. Li, and E. Alexov. Modeling Proteins and Small Molecules with Inhomogeneous Dielectric Function: Implementation in Delphi. Biophysical Journal, Elsevier, volume 104, issue 2, pages 35a, 2013.

E. Alexov and G.-W. Wei. Preface: Special Issue on Modeling Electrostatics in Molecular Biology (MEMB). Communications in Computational Physics, Cambridge University Press, volume 13, issue 1, pages i-v, 2013.

Z. Zhang, A. Pegg, Y. Ikeguchi, and E. Alexov. Enhancing Human Spermine Synthase Activity by Site Directed Mutations. Biophysical Journal, Elsevier, volume 104, issue 2, pages 380a, 2013.

M. Petukh, C. Li, and E. Alexov. Predicting non-specifically bound ions: Application to BION webserver and beryllium disease. Biophysical Journal, Elsevier, volume 104, issue 2, pages 506a, 2013.

M. Petukh, T. Kimmet, and E. Alexov. BION web server: predicting non-specifically bound surface ions. Bioinformatics, Oxford University Press, volume 29, issue 6, pages 805-806, 2013.

E. Alexov and M. Sternberg. Understanding molecular effects of naturally occurring genetic differences. Journal of molecular biology, volume 425, issue 21, pages 3911-3913, 2013.

C. Li, M. Petukh, L. Li, and E. Alexov. Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi. Journal of computational chemistry, Wiley Online Library, volume 34, issue 22, pages 1949-1960, 2013.

L. Wang, S. Witham, Z. Zhang, L. Li, M. E. Hodsdon, and E. Alexov. In silico investigation of pH-dependence of prolactin and human growth hormone binding to human prolactin receptor. Communications in computational physics, NIH Public Access, volume 13, issue 1, pages 207, 2013.

Z. Zhang, S. Witham, M. Petukh, G. Moroy, M. Miteva, Y. Ikeguchi, and E. Alexov. A rational free energy-based approach to understanding and targeting disease-causing missense mutations. Journal of the American Medical Informatics Association, BMJ Publishing Group BMA House, Tavistock Square, London, WC1H 9JR, volume 20, issue 4, pages 643-651, 2013.

Z. Zhang, Y. Zheng, M. Petukh, A. Pegg, Y. Ikeguchi, and E. Alexov. Enhancing human spermine synthase activity by engineered mutations. PLoS Comput Biol, Public Library of Science, volume 9, issue 2, pages e1002924, 2013.

S. Sarkar, S. Witham, J. Zhang, M. Zhenirovskyy, W. Rocchia, and E. Alexov. DelPhi Web Server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their complexes. Communications in computational physics, NIH Public Access, volume 13, issue 1, pages 269, 2013.

L. Wang, Z. Zhang, W. Rocchia, and E. Alexov. Using DelPhi capabilities to mimic protein’s conformational reorganization with amino acid specific dielectric constants. Communications in computational physics, NIH Public Access, volume 13, issue 1, pages 13, 2013.

C. Li, L. Li, M. Petukh, and E. Alexov. Progress in developing Poisson-Boltzmann equation solvers. Computational and Mathematical Biophysics, De Gruyter, volume 1, issue 1, pages 42-62, 2013.

Z. Zhang, J. Norris, V. Kalscheuer, T. Wood, L. Wang, C. Schwartz, E. Alexov, and H. V. Esch. A Y328C missense mutation in spermine synthase causes a mild form of Snyder--Robinson syndrome. Human molecular genetics, Oxford University Press, volume 22, issue 18, pages 3789-3797, 2013.

M. Petukh, S. Stefl, and E. Alexov. The role of protonation states in ligand-receptor recognition and binding. Current pharmaceutical design, Bentham Science Publishers, volume 19, issue 23, pages 4182-4190, 2013.

S. Decherchi, J. Colmenares, C. E. Catalano, M. Spagnuolo, E. Alexov, and W. Rocchia. Between algorithm and model: different molecular surface definitions for the Poisson-Boltzmann based electrostatic characterization of biomolecules in solution. Communications in computational physics, NIH Public Access, volume 13, pages 61, 2013.

A. V. Onufriev and E. Alexov. Protonation and pK changes in protein-ligand binding. Quarterly reviews of biophysics, NIH Public Access, volume 46, issue 2, pages 181, 2013.

H. Nishi, M. Tyagi, S. Teng, B. A. Shoemaker, K. Hashimoto, E. Alexov, S. Wuchty, and A. R. Panchenko. Cancer missense mutations alter binding properties of proteins and their interaction networks. PloS one, Public Library of Science, volume 8, issue 6, pages e66273, 2013.

S. Stefl, H. Nishi, M. Petukh, A. R. Panchenko, and E. Alexov. Molecular mechanisms of disease-causing missense mutations. Journal of molecular biology, Academic Press, volume 425, issue 21, pages 3919-3936, 2013.

L. Li, C. Li, Z. Zhang, and E. Alexov. On the dielectric “constant” of proteins: smooth dielectric function for macromolecular modeling and its implementation in DelPhi. Journal of chemical theory and computation, American Chemical Society, volume 9, issue 4, pages 2126-2136, 2013.