P. Kundrotas and E. Alexov. Optimum pH for protein-protein complexes. APS March Meeting Abstracts, pages C1-121, 2006.

E. Alexov, A. Allardice, and P. Kundrotas. Combining biophysical and bioinformatical approaches for predicting residue's contacts. APS March Meeting Abstracts, pages A26-014, 2006.

P. Kundrotas and E. Alexov. Predicting 3D structures of transient protein-protein complexes. APS March Meeting Abstracts, pages A26-007, 2006.

P. J. Kundrotas and E. Alexov. Predicting 3D structures of transient protein--protein complexes by homology. Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, Elsevier, volume 1764, issue 9, pages 1498-1511, 2006.

P. J. Kundrotas and E. G. Alexov. Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives. BMC bioinformatics, BioMed Central, volume 7, issue 1, pages 1-9, 2006.

P. J. Kundrotas and E. Alexov. Electrostatic properties of protein-protein complexes. Biophysical journal, Elsevier, volume 91, issue 5, pages 1724-1736, 2006.

M. J. Grey, Y. Tang, E. Alexov, C. J. McKnight, D. P. Raleigh, and A. G. Palmer III. Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain. Journal of molecular biology, Academic Press, volume 355, issue 5, pages 1078-1094, 2006.

Y. Wu, J. S. Hudson, Q. Lu, J. M. Moore, A. S. Mount, A. M. Rao, E. Alexov, and P. C. Ke. Coating single-walled carbon nanotubes with phospholipids. The Journal of Physical Chemistry B, American Chemical Society, volume 110, issue 6, pages 2475-2478, 2006.