TY - JOUR T1 - Modeling the First Electron Transfer from QA to QB AU - Alexov, E. AU - Gunner, M. JO - Molecular Bioenergetics: Simulations of Electron, Proton, and Energy Transfer PY - 2004 PB - Amer Chemical Society IS - 883 SP - 93 EP - 93 ER - TY - CHAP T1 - Modeling the First Electron Transfer from QA to QB in Reaction Center Proteins from Rb. sphaeroides AU - Alexov, E. AU - Gunner, M. PY - 2004 ER - TY - CHAP T1 - Use of limited suboptimal alignment in homology modeling AU - Tang, C. L. AU - Petrey, D. AU - Fasnacht, M. AU - Kosloff, M. AU - Alexov, E. AU - Honig, B. TI - Poster presented at 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB) PY - 2004 ER - TY - JOUR T1 - Experimental and numerical study of the poplar plastocyanin isoforms using Tyr as a probe for electrostatic similarity and dissimilarity AU - Shosheva, A. AU - Donchev, A. AU - Dimitrov, M. AU - Zlatanov, I. AU - Toromanov, G. AU - Getov, V. AU - Alexov, E. JO - Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics PY - 2004 PB - Elsevier VL - 1698 IS - 1 SP - 67 EP - 75 ER - TY - JOUR T1 - Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein--inhibitor association: application to plasmepsin, cathepsin D and endothiapepsin--pepstatin complexes AU - Alexov, E. JO - Proteins: Structure, Function, and Bioinformatics PY - 2004 PB - Wiley Online Library VL - 56 IS - 3 SP - 572 EP - 584 ER - TY - JOUR T1 - Numerical calculations of the pH of maximal protein stability: The effect of the sequence composition and three-dimensional structure AU - Alexov, E. JO - European Journal of Biochemistry PY - 2004 PB - Blackwell Science Ltd Oxford, UK VL - 271 IS - 1 SP - 173 EP - 185 ER -