W. Rocchia, S. Sridharan, A. Nicholls, E. Alexov, A. Chiabrera, and B. Honig. Rapid grid-based construction of the molecular surface for both molecules and geometric objects: applications to the finite difference Poisson-Boltzmann method. J Comp Chem, volume 23, pages 128-137, 2002.

C. Tang, E. Alexov, A. Pyle, and B. Honig. Perturbations of pKa in RNA structures: A survey using a Monte Carlo application of the NLPB equation. BIOPHYSICAL JOURNAL, volume 82, issue 1, pages 131A-131A, 2002.

E. Alexov and B. Honig. The origins of pH dependent effects on protein stability: Applications to proteases. Biophysical Journal, volume 82, issue 1, pages 474A-474A, 2002.

J. Tandori, P. Maroti, E. Alexov, P. Sebban, and L. Baciou. Key role of proline L209 in connecting the distant quinone pockets in the reaction center of Rhodobacter sphaeroides. Proceedings of the National Academy of Sciences, National Academy of Sciences, volume 99, issue 10, pages 6702-6706, 2002.

R. E. Georgescu, E. G. Alexov, and M. R. Gunner. Combining conformational flexibility and continuum electrostatics for calculating pKas in proteins. Biophysical journal, Cell Press, volume 83, issue 4, pages 1731-1748, 2002.

W. Rocchia, S. Sridharan, A. Nicholls, E. Alexov, A. Chiabrera, and B. Honig. Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: Applications to the molecular systems and geometric objects. Journal of computational chemistry, Wiley Online Library, volume 23, issue 1, pages 128-137, 2002.