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JO - Bioinformatics PY - 2021 VL - 37 IS - 21 SP - 3760 EP - 3765 ER - TY - JOUR T1 - Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy AU - Lee, Y.-R. AU - Khan, K. AU - Armfield-Uhas, K. AU - Srikanth, S. AU - Thompson, N. A. AU - Pardo, M. AU - Yu, L. AU - Norris, J. W. AU - Peng, Y. AU - Gripp, K. W. AU - others, JO - Nature communications PY - 2020 PB - Nature Publishing Group VL - 11 IS - 1 SP - 1 EP - 17 ER - TY - JOUR T1 - pH-dependent interactions of Apolipophorin-III with a lipid disk AU - Peng, Y. AU - Kelle, R. AU - Little, C. AU - Michonova, E. AU - Kornev, K. G. AU - Alexov, E. JO - Journal of Computational Biophysics and Chemistry PY - 2020 PB - World Scientific Publishing Company SP - 1 EP - 12 ER - TY - JOUR T1 - Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0] AU - Panday, S. K. AU - Shashikala, M. H. AU - Koirala, M. AU - Pahari, S. AU - Chakvorty, A. AU - Peng, Y. AU - Li, L. AU - Jia, Z. AU - Li, C. AU - Alexov, E. JO - Living Journal of Computational Molecular Science PY - 2019 PB - University of Colorado Boulder VL - 1 IS - 2 SP - 10841 EP - 10841 ER - TY - JOUR T1 - Novel Genetic Markers for Early Detection of Elevated Breast Cancer Risk in Women AU - Wu, B. AU - Peng, Y. AU - Eggert, J. AU - Alexov, E. JO - International journal of molecular sciences PY - 2019 PB - Multidisciplinary Digital Publishing Institute VL - 20 IS - 19 SP - 4828 EP - 4828 ER - TY - JOUR T1 - DFMD: fast and effective DelPhiForce steered molecular dynamics approach to model ligand approach toward a receptor: Application to spermine synthase enzyme AU - Peng, Y. AU - Yang, Y. AU - Li, L. AU - Jia, Z. AU - Cao, W. AU - Alexov, E. JO - Frontiers in molecular biosciences PY - 2019 PB - Frontiers VL - 6 SP - 74 EP - 74 ER - TY - JOUR T1 - DelPhi suite: New developments and review of functionalities AU - Li, C. AU - Jia, Z. AU - Chakravorty, A. AU - Pahari, S. AU - Peng, Y. 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AU - Alexov, E. JO - Biophysical Journal PY - 2019 PB - Elsevier VL - 116 IS - 3 SP - 290a EP - 290a ER - TY - JOUR T1 - Structural perspective on revealing and altering molecular functions of genetic variants linked with diseases AU - Peng, Y. AU - Alexov, E. AU - Basu, S. JO - International journal of molecular sciences PY - 2019 PB - Multidisciplinary Digital Publishing Institute VL - 20 IS - 3 SP - 548 EP - 548 ER - TY - JOUR T1 - Structural Perspective on Revealing and Altering Molecular Mechanisms of Genetic Variants Linked with Diseases AU - Peng, Y. AU - Alexov, E. AU - Basu, S. PY - 2018 ER - TY - JOUR T1 - E-hooks provide guidance and a soft landing for the microtubule binding domain of dynein AU - Tajielyato, N. AU - Li, L. AU - Peng, Y. AU - Alper, J. AU - Alexov, E. JO - Scientific reports PY - 2018 PB - Nature Publishing Group VL - 8 IS - 1 SP - 1 EP - 10 ER - TY - JOUR T1 - Gaussian-based smooth dielectric function: a surface-free approach for modeling macromolecular binding in solvents AU - Chakravorty, A. AU - Jia, Z. AU - Peng, Y. AU - Tajielyato, N. AU - Wang, L. AU - Alexov, E. JO - Frontiers in molecular biosciences PY - 2018 PB - Frontiers VL - 5 SP - 25 EP - 25 ER - TY - JOUR T1 - The capricious electrostatic force: Revealing the signaling pathway in integrin $\alpha$ 2-I domain AU - Jia, Z. AU - Li, L. AU - Peng, Y. AU - Ding, F. AU - Alexov, E. JO - Journal of Theoretical and Computational Chemistry PY - 2018 PB - World Scientific Publishing Company VL - 17 IS - 3 SP - 1840001 EP - 1840001 ER - TY - JOUR T1 - Key apoptotic genes APAF1 and CASP9 implicated in recurrent folate-resistant neural tube defects AU - Spellicy, C. J. AU - Norris, J. AU - Bend, R. AU - Bupp, C. AU - Mester, P. AU - Reynolds, T. AU - Dean, J. AU - Peng, Y. 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TI - ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY PY - 2017 VL - 254 ER - TY - JOUR T1 - Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations AU - Li, L. AU - Jia, Z. AU - Peng, Y. AU - Godar, S. AU - Getov, I. AU - Teng, S. AU - Alper, J. AU - Alexov, E. JO - Scientific reports PY - 2017 PB - Nature Publishing Group VL - 7 IS - 1 SP - 1 EP - 12 ER - TY - JOUR T1 - Protein Conformational Disease: Visit the Facts at a Glance AU - Peng, Y. AU - Alexov, E. JO - eLS PY - 2017 PB - American Cancer Society SP - 1 EP - 7 ER - TY - JOUR T1 - DelPhiForce web server: electrostatic forces and energy calculations and visualization AU - Li, L. AU - Jia, Z. AU - Peng, Y. AU - Chakravorty, A. AU - Sun, L. AU - Alexov, E. JO - Bioinformatics PY - 2017 PB - Oxford University Press VL - 33 IS - 22 SP - 3661 EP - 3663 ER - TY - JOUR T1 - Computational investigation of proton transfer, p K a shifts and p H-optimum of protein--DNA and protein--RNA complexes AU - Peng, Y. AU - Alexov, E. JO - Proteins: Structure, Function, and Bioinformatics PY - 2017 VL - 85 IS - 2 SP - 282 EP - 295 ER - TY - JOUR T1 - Cofactors-loaded quaternary structure of lysine-specific demethylase 5C (KDM5C) protein: Computational model AU - Peng, Y. AU - Alexov, E. JO - Proteins: Structure, Function, and Bioinformatics PY - 2016 VL - 84 IS - 12 SP - 1797 EP - 1809 ER - TY - JOUR T1 - Revealing the effects of missense mutations causing Snyder-Robinson syndrome on the stability and dimerization of spermine synthase AU - Peng, Y. AU - Norris, J. AU - Schwartz, C. AU - Alexov, E. JO - International journal of molecular sciences PY - 2016 PB - Multidisciplinary Digital Publishing Institute VL - 17 IS - 1 SP - 77 EP - 77 ER - TY - JOUR T1 - Investigating the linkage between disease-causing amino acid variants and their effect on protein stability and binding AU - Peng, Y. AU - Alexov, E. JO - Proteins: Structure, Function, and Bioinformatics PY - 2016 VL - 84 IS - 2 SP - 232 EP - 239 ER - TY - JOUR T1 - Mutations in the KDM5C ARID domain and their plausible association with syndromic Claes-Jensen-Type disease AU - Peng, Y. AU - Suryadi, J. AU - Yang, Y. AU - Kucukkal, T. G. AU - Cao, W. AU - Alexov, E. JO - International journal of molecular sciences PY - 2015 PB - Multidisciplinary Digital Publishing Institute VL - 16 IS - 11 SP - 27270 EP - 27287 ER -