R. Aprigliano, S. Bradamante, B. Mihaljevic, W. Wang, S. L. F. Martin, D. L. Bordin, M. Bosshard, N. P. Montaldo, Y. Peng, E. Alexov, and others. Increased p53 signaling impairs neural differentiation causing HUWE1-promoted intellectual disabilities. Cell Reports Medicine, Cold Spring Harbor Laboratory, volume 2, pages 100240, April 2021.

G. Li, S. Panday, Y. Peng, and E. Alexov. SAMPDI-3D: predicting the effects of protein and DNA mutations on protein-DNA interactions. Bioinformatics (Oxford, England), 2021.

G. Li, S. Panday, Y. Peng, and E. Alexov. SAMPDI-3D: predicting the effects of protein and DNA mutations on protein–DNA interactions. Bioinformatics, volume 37, issue 21, pages 3760-3765, 2021.

Y.-R. Lee, K. Khan, K. Armfield-Uhas, S. Srikanth, N. A. Thompson, M. Pardo, L. Yu, J. W. Norris, Y. Peng, K. W. Gripp, and others. Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy. Nature communications, Nature Publishing Group, volume 11, issue 1, pages 1-17, 2020.

Y. Peng, R. Kelle, C. Little, E. Michonova, K. G. Kornev, and E. Alexov. pH-dependent interactions of Apolipophorin-III with a lipid disk. Journal of Computational Biophysics and Chemistry, World Scientific Publishing Company, pages 1-12, 2020.

S. K. Panday, M. H. Shashikala, M. Koirala, S. Pahari, A. Chakvorty, Y. Peng, L. Li, Z. Jia, C. Li, and E. Alexov. Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]. Living Journal of Computational Molecular Science, University of Colorado Boulder, volume 1, issue 2, pages 10841, 2019.

B. Wu, Y. Peng, J. Eggert, and E. Alexov. Novel Genetic Markers for Early Detection of Elevated Breast Cancer Risk in Women. International journal of molecular sciences, Multidisciplinary Digital Publishing Institute, volume 20, issue 19, pages 4828, 2019.

Y. Peng, Y. Yang, L. Li, Z. Jia, W. Cao, and E. Alexov. DFMD: fast and effective DelPhiForce steered molecular dynamics approach to model ligand approach toward a receptor: Application to spermine synthase enzyme. Frontiers in molecular biosciences, Frontiers, volume 6, pages 74, 2019.

C. Li, Z. Jia, A. Chakravorty, S. Pahari, Y. Peng, S. Basu, M. Koirala, S. K. Panday, M. Petukh, L. Li, and others. DelPhi suite: New developments and review of functionalities. Journal of computational chemistry, John Wiley \& Sons, Inc. Hoboken, USA, volume 40, issue 28, pages 2502-2508, 2019.

C. J. Spellicy, Y. Peng, L. Olewiler, S. S. Cathey, R. C. Rogers, D. Bartholomew, J. Johnson, E. Alexov, J. A. Lee, M. J. Friez, and others. Three additional patients with EED-associated overgrowth: potential mutation hotspots identified? Journal of human genetics, Nature Publishing Group, volume 64, issue 6, pages 561-572, 2019.

B. Wu, Y. Peng, J. A. Eggert, and E. Alexov. Investigating the Effects of Missense Mutations in MSH2 Gene Associated with Lynch Syndrome. Biophysical Journal, Elsevier, volume 116, issue 3, pages 192a, 2019.

Y. Peng, M. Koirala, and E. Alexov. Electrostatic Force Driven Molecular Dynamics Simulations. Biophysical Journal, Elsevier, volume 116, issue 3, pages 290a, 2019.

Y. Peng, E. Alexov, and S. Basu. Structural perspective on revealing and altering molecular functions of genetic variants linked with diseases. International journal of molecular sciences, Multidisciplinary Digital Publishing Institute, volume 20, issue 3, pages 548, 2019.

Y. Peng, E. Alexov, and S. Basu. Structural Perspective on Revealing and Altering Molecular Mechanisms of Genetic Variants Linked with Diseases. 2018.

N. Tajielyato, L. Li, Y. Peng, J. Alper, and E. Alexov. E-hooks provide guidance and a soft landing for the microtubule binding domain of dynein. Scientific reports, Nature Publishing Group, volume 8, issue 1, pages 1-10, 2018.

A. Chakravorty, Z. Jia, Y. Peng, N. Tajielyato, L. Wang, and E. Alexov. Gaussian-based smooth dielectric function: a surface-free approach for modeling macromolecular binding in solvents. Frontiers in molecular biosciences, Frontiers, volume 5, pages 25, 2018.

Z. Jia, L. Li, Y. Peng, F. Ding, and E. Alexov. The capricious electrostatic force: Revealing the signaling pathway in integrin $\alpha$ 2-I domain. Journal of Theoretical and Computational Chemistry, World Scientific Publishing Company, volume 17, issue 3, pages 1840001, 2018.

C. J. Spellicy, J. Norris, R. Bend, C. Bupp, P. Mester, T. Reynolds, J. Dean, Y. Peng, E. Alexov, C. E. Schwartz, and others. Key apoptotic genes APAF1 and CASP9 implicated in recurrent folate-resistant neural tube defects. European Journal of Human Genetics, Nature Publishing Group, volume 26, issue 3, pages 420-427, 2018.

Y. Peng, R. Myers, W. Zhang, and E. Alexov. Computational investigation of the missense mutations in DHCR7 gene associated with Smith-Lemli-Opitz syndrome. International journal of molecular sciences, Multidisciplinary Digital Publishing Institute, volume 19, issue 1, pages 141, 2018.

Y. Peng, L. Sun, Z. Jia, L. Li, and E. Alexov. Predicting protein--DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver. Bioinformatics, Oxford University Press, volume 34, issue 5, pages 779-786, 2018.

Y. Peng and E. Alexov. Predicting binding free energy change caused by missense mutations in protein-DNA interactions using modified MM/PBSA method. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 254, 2017.

L. Li, Z. Jia, Y. Peng, S. Godar, I. Getov, S. Teng, J. Alper, and E. Alexov. Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations. Scientific reports, Nature Publishing Group, volume 7, issue 1, pages 1-12, 2017.

Y. Peng and E. Alexov. Protein Conformational Disease: Visit the Facts at a Glance. eLS, American Cancer Society, pages 1-7, 2017.

L. Li, Z. Jia, Y. Peng, A. Chakravorty, L. Sun, and E. Alexov. DelPhiForce web server: electrostatic forces and energy calculations and visualization. Bioinformatics, Oxford University Press, volume 33, issue 22, pages 3661-3663, 2017.

Y. Peng and E. Alexov. Computational investigation of proton transfer, p K a shifts and p H-optimum of protein--DNA and protein--RNA complexes. Proteins: Structure, Function, and Bioinformatics, volume 85, issue 2, pages 282-295, 2017.

Y. Peng and E. Alexov. Cofactors-loaded quaternary structure of lysine-specific demethylase 5C (KDM5C) protein: Computational model. Proteins: Structure, Function, and Bioinformatics, volume 84, issue 12, pages 1797-1809, 2016.

Y. Peng, J. Norris, C. Schwartz, and E. Alexov. Revealing the effects of missense mutations causing Snyder-Robinson syndrome on the stability and dimerization of spermine synthase. International journal of molecular sciences, Multidisciplinary Digital Publishing Institute, volume 17, issue 1, pages 77, 2016.

Y. Peng and E. Alexov. Investigating the linkage between disease-causing amino acid variants and their effect on protein stability and binding. Proteins: Structure, Function, and Bioinformatics, volume 84, issue 2, pages 232-239, 2016.

Y. Peng, J. Suryadi, Y. Yang, T. G. Kucukkal, W. Cao, and E. Alexov. Mutations in the KDM5C ARID domain and their plausible association with syndromic Claes-Jensen-Type disease. International journal of molecular sciences, Multidisciplinary Digital Publishing Institute, volume 16, issue 11, pages 27270-27287, 2015.