S. Panday and E. Alexov. Protein–Protein Binding Free Energy Predictions with the MM/PBSA Approach Complemented with the Gaussian-Based Method for Entropy Estimation. ACS omega, volume 7, issue 13, pages 11057-11067, 2022.

G. Li, S. Panday, Y. Peng, and E. Alexov. SAMPDI-3D: predicting the effects of protein and DNA mutations on protein-DNA interactions. Bioinformatics (Oxford, England), 2021.

G. Li, S. K. Panday, and E. Alexov. SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability. International Journal of Molecular Sciences, Multidisciplinary Digital Publishing Institute, volume 22, issue 2, pages 606, 2021.

H. Shashikala, A. Chakravorty, S. K. Panday, and E. Alexov. BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of Electrostatics. International Journal of Molecular Sciences, Multidisciplinary Digital Publishing Institute, volume 22, issue 1, pages 272, 2021.

G. Li, S. Panday, Y. Peng, and E. Alexov. SAMPDI-3D: predicting the effects of protein and DNA mutations on protein–DNA interactions. Bioinformatics, volume 37, issue 21, pages 3760-3765, 2021.

A. Chakravorty, S. Panday, S. Pahari, S. Zhao, and E. Alexov. Capturing the Effects of Explicit Waters in Implicit Electrostatics Modeling: Qualitative Justification of Gaussian-Based Dielectric Models in DelPhi. Journal of chemical information and modeling, American Chemical Society, volume 60, issue 4, pages 2229-2246, 2020.

S. K. Panday, M. H. Shashikala, A. Chakravorty, S. Zhao, and E. Alexov. Reproducing ensemble averaged electrostatics with Super-Gaussian-based smooth dielectric function: application to electrostatic component of binding energy of protein complexes. Communications in Information and Systems, volume 19, issue 4, 2019.

S. K. Panday, M. H. Shashikala, M. Koirala, S. Pahari, A. Chakvorty, Y. Peng, L. Li, Z. Jia, C. Li, and E. Alexov. Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]. Living Journal of Computational Molecular Science, University of Colorado Boulder, volume 1, issue 2, pages 10841, 2019.

C. Li, Z. Jia, A. Chakravorty, S. Pahari, Y. Peng, S. Basu, M. Koirala, S. K. Panday, M. Petukh, L. Li, and others. DelPhi suite: New developments and review of functionalities. Journal of computational chemistry, John Wiley \& Sons, Inc. Hoboken, USA, volume 40, issue 28, pages 2502-2508, 2019.