@article{talley2008modeling, author = "K. Talley and P. Kundrotas and E. Alexov", title = "Modeling salt dependence of protein-protein association: Linear vs non-linear Poisson-Boltzmann equation", year = 2008, journal = "Commun Comput Phys", volume = 3, number = 5, pages = "1071-1086" } @article{talley2008electrostatic, author = "K. Talley and C. Ng and M. Shoppell and P. Kundrotas and E. Alexov", title = "On the electrostatic component of protein-protein binding free energy", year = 2008, journal = "PMC biophysics", publisher = "BioMed Central", volume = 1, number = 1, pages = "1-23" } @article{kundrotas2008homology, author = "P. J. Kundrotas and M. F. Lensink and E. Alexov", title = "Homology-based modeling of 3D structures of protein--protein complexes using alignments of modified sequence profiles", year = 2008, journal = "International journal of biological macromolecules", publisher = "Elsevier", volume = 43, number = 2, pages = "198-208" } @inproceedings{alexov2007optimization, author = "E. Alexov and K. Brock and P. Kundrotas", title = "Optimization of the electrostatic interactions in protein-protein complexes", year = 2007, booktitle = "APS March Meeting Abstracts", pages = "K1-021" } @inproceedings{kundrotas2007utilizing, author = "P. Kundrotas and E. Alexov", title = "Utilizing Profile-to-Profile Alignments for Predicting Protein-Protein Interactions", year = 2007, booktitle = "APS March Meeting Abstracts", pages = "K1-020" } @inproceedings{kundrotas2007predicting, author = "P. Kundrotas and E. Alexov", title = "Predicting protein-protein interactions using non-gapped interacting residue segments", year = 2007, booktitle = "BIOPHYSICAL JOURNAL", pages = "367A-368A" } @article{kundrotas2007banmoki, author = "P. Kundrotas and P. Georgieva and A. Shosheva and P. Christova and E. Alexov", title = "BANMOKI: A searchable database of homology-based 3D models and their electrostatic properties of five bacterial nucleoside monophosphate kinase families", year = 2007, journal = "International journal of biological macromolecules", publisher = "Elsevier", volume = 41, number = 1, pages = "114-119" } @article{kundrotas2007predicting, author = "P. Kundrotas and E. Alexov", title = "Predicting interacting and interfacial residues using continuous sequence segments", year = 2007, journal = "International journal of biological macromolecules", publisher = "Elsevier", volume = 41, number = 5, pages = "615-623" } @article{kundrotas2007assessing, author = "P. Kundrotas and P. Georgieva and A. Shosheva and P. Christova and E. Alexov", title = "Assessing the quality of the homology-modeled 3D structures from electrostatic standpoint: test on bacterial nucleoside monophosphate kinase families", year = 2007, journal = "Journal of bioinformatics and computational biology", publisher = "World Scientific", volume = 5, number = 3, pages = "693-715" } @article{brock2007optimization, author = "K. Brock and K. Talley and K. Coley and P. Kundrotas and E. Alexov", title = "Optimization of electrostatic interactions in protein-protein complexes", year = 2007, journal = "Biophysical journal", publisher = "Elsevier", volume = 93, number = 10, pages = "3340-3352" } @article{kundrotas2007protcom, author = "P. J. Kundrotas and E. Alexov", title = "PROTCOM: searchable database of protein complexes enhanced with domain--domain structures", year = 2007, journal = "Nucleic Acids Research", publisher = "Oxford University Press", volume = 35, number = 1, pages = "D575-D579" } @inproceedings{kundrotas2006optimum, author = "P. Kundrotas and E. Alexov", title = "Optimum pH for protein-protein complexes.", year = 2006, booktitle = "APS March Meeting Abstracts", pages = "C1-121" } @inproceedings{alexov2006combining, author = "E. Alexov and A. Allardice and P. Kundrotas", title = "Combining biophysical and bioinformatical approaches for predicting residue's contacts.", year = 2006, booktitle = "APS March Meeting Abstracts", pages = "A26-014" } @inproceedings{kundrotas2006predicting, author = "P. Kundrotas and E. Alexov", title = "Predicting 3D structures of transient protein-protein complexes", year = 2006, booktitle = "APS March Meeting Abstracts", pages = "A26-007" } @article{kundrotas2006predicting, author = "P. J. Kundrotas and E. Alexov", title = "Predicting 3D structures of transient protein--protein complexes by homology", year = 2006, journal = "Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics", publisher = "Elsevier", volume = 1764, number = 9, pages = "1498-1511" } @article{kundrotas2006predicting, author = "P. J. Kundrotas and E. G. Alexov", title = "Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives", year = 2006, journal = "BMC bioinformatics", publisher = "BioMed Central", volume = 7, number = 1, pages = "1-9" } @article{kundrotas2006electrostatic, author = "P. J. Kundrotas and E. Alexov", title = "Electrostatic properties of protein-protein complexes", year = 2006, journal = "Biophysical journal", publisher = "Elsevier", volume = 91, number = 5, pages = "1724-1736" }