M. Koirala, H. Shashikala, J. Jeffries, B. Wu, S. K. Loftus, J. H. Zippin, and E. Alexov. Computational Investigation of the pH Dependence of Stability of Melanosome Proteins: Implication for Melanosome formation and Disease. International journal of molecular sciences, Multidisciplinary Digital Publishing Institute, volume 22, issue 15, pages 8273, 2021.

M. Koirala and E. Alexov. Ab-initio binding of barnase--barstar with DelPhiForce steered Molecular Dynamics (DFMD) approach. Journal of Theoretical and Computational Chemistry, World Scientific Publishing Company, volume 19, issue 4, pages 2050016, 2020.

S. R. Ganakammal, M. Koirala, B. Wu, and E. Alexov. In-silico analysis to identify the role of MEN1 missense mutations in breast cancer. Journal of Theoretical and Computational Chemistry, World Scientific Publishing Company, volume 19, issue 6, pages 2041002, 2020.

M. Koirala and E. Alexov. Computational Analysis of Missense Mutations in Creatine Transporter Protein Associated with Creatine Deficiency Syndrome. Biophysical Journal, Elsevier, volume 118, issue 3, pages 197a, 2020.

M. Koirala and E. Alexov. Computational chemistry methods to investigate the effects caused by DNA variants linked with disease. Journal of Theoretical and Computational Chemistry, World Scientific Publishing Company, volume 19, issue 6, pages 1930001, 2020.

S. K. Panday, M. H. Shashikala, M. Koirala, S. Pahari, A. Chakvorty, Y. Peng, L. Li, Z. Jia, C. Li, and E. Alexov. Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]. Living Journal of Computational Molecular Science, University of Colorado Boulder, volume 1, issue 2, pages 10841, 2019.

C. Li, Z. Jia, A. Chakravorty, S. Pahari, Y. Peng, S. Basu, M. Koirala, S. K. Panday, M. Petukh, L. Li, and others. DelPhi suite: New developments and review of functionalities. Journal of computational chemistry, John Wiley \& Sons, Inc. Hoboken, USA, volume 40, issue 28, pages 2502-2508, 2019.

Y. Peng, M. Koirala, and E. Alexov. Electrostatic Force Driven Molecular Dynamics Simulations. Biophysical Journal, Elsevier, volume 116, issue 3, pages 290a, 2019.