TY - JOUR T1 - PKAD: a database of experimentally measured pKa values of ionizable groups in proteins AU - Pahari, S. AU - Sun, L. AU - Alexov, E. JO - Database PY - 2019 PB - Oxford Academic VL - 2019 ER - TY - JOUR T1 - Surface-Free Protocol for Computing PKA's (DelPhiPKa): Applications to Protein-Protein Interactions AU - Pahari, S. AU - Sun, L. AU - Alexov, E. JO - Biophysical Journal PY - 2019 PB - Elsevier VL - 116 IS - 3 SP - 166a EP - 166a ER - TY - JOUR T1 - DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate AU - Pahari, S. AU - Sun, L. AU - Basu, S. AU - Alexov, E. JO - Proteins: Structure, Function, and Bioinformatics PY - 2018 PB - John Wiley \& Sons, Inc. Hoboken, USA VL - 86 IS - 12 SP - 1277 EP - 1283 ER - TY - JOUR T1 - Predicting protein--DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver AU - Peng, Y. AU - Sun, L. AU - Jia, Z. AU - Li, L. AU - Alexov, E. JO - Bioinformatics PY - 2018 PB - Oxford University Press VL - 34 IS - 5 SP - 779 EP - 786 ER - TY - JOUR T1 - DelPhiForce web server: electrostatic forces and energy calculations and visualization AU - Li, L. AU - Jia, Z. AU - Peng, Y. AU - Chakravorty, A. AU - Sun, L. AU - Alexov, E. JO - Bioinformatics PY - 2017 PB - Oxford University Press VL - 33 IS - 22 SP - 3661 EP - 3663 ER -