S. Pahari, L. Sun, and E. Alexov. PKAD: a database of experimentally measured pKa values of ionizable groups in proteins. Database, Oxford Academic, volume 2019, 2019.

S. Pahari, L. Sun, and E. Alexov. Surface-Free Protocol for Computing PKA's (DelPhiPKa): Applications to Protein-Protein Interactions. Biophysical Journal, Elsevier, volume 116, issue 3, pages 166a, 2019.

S. Pahari, L. Sun, S. Basu, and E. Alexov. DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate. Proteins: Structure, Function, and Bioinformatics, John Wiley \& Sons, Inc. Hoboken, USA, volume 86, issue 12, pages 1277-1283, 2018.

Y. Peng, L. Sun, Z. Jia, L. Li, and E. Alexov. Predicting protein--DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver. Bioinformatics, Oxford University Press, volume 34, issue 5, pages 779-786, 2018.

L. Li, Z. Jia, Y. Peng, A. Chakravorty, L. Sun, and E. Alexov. DelPhiForce web server: electrostatic forces and energy calculations and visualization. Bioinformatics, Oxford University Press, volume 33, issue 22, pages 3661-3663, 2017.