S. Sun, P. Poudel, E. Alexov, and L. Li. Electrostatics in Computational Biophysics and Its Implications for Disease Effects. International Journal of Molecular Sciences, volume 23, issue 18, pages 10347, 2022. S. K. Panday, M. H. Shashikala, M. Koirala, S. Pahari, A. Chakvorty, Y. Peng, L. Li, Z. Jia, C. Li, and E. Alexov. Modeling electrostatics in molecular biology: A tutorial of DelPhi and associated resources [Article v1. 0]. Living Journal of Computational Molecular Science, University of Colorado Boulder, volume 1, issue 2, pages 10841, 2019. Y. Peng, Y. Yang, L. Li, Z. Jia, W. Cao, and E. Alexov. DFMD: fast and effective DelPhiForce steered molecular dynamics approach to model ligand approach toward a receptor: Application to spermine synthase enzyme. Frontiers in molecular biosciences, Frontiers, volume 6, pages 74, 2019. C. Li, Z. Jia, A. Chakravorty, S. Pahari, Y. Peng, S. Basu, M. Koirala, S. K. Panday, M. Petukh, L. Li, and others. DelPhi suite: New developments and review of functionalities. Journal of computational chemistry, John Wiley \& Sons, Inc. Hoboken, USA, volume 40, issue 28, pages 2502-2508, 2019. N. Tajielyato, L. Li, Y. Peng, J. Alper, and E. Alexov. E-hooks provide guidance and a soft landing for the microtubule binding domain of dynein. Scientific reports, Nature Publishing Group, volume 8, issue 1, pages 1-10, 2018. Z. Jia, L. Li, Y. Peng, F. Ding, and E. Alexov. The capricious electrostatic force: Revealing the signaling pathway in integrin $\alpha$ 2-I domain. Journal of Theoretical and Computational Chemistry, World Scientific Publishing Company, volume 17, issue 3, pages 1840001, 2018. S. C. Godar, H. Lovelace, J. Eller, M. Spencer, L. Li, G. Hamilton, H. Sanabria, E. Alexov, and J. Alper. Single Molecule Study of Long-Range Electrostatic Binding Affinity of Cytoplasmic Dynein's Microtubule Binding Domain. Biophysical Journal, Elsevier, volume 114, issue 3, pages 512a, 2018. A. Chakravorty, Z. Jia, L. Li, S. Zhao, and E. Alexov. Reproducing the ensemble average polar solvation energy of a protein from a single structure: gaussian-based smooth dielectric function for macromolecular modeling. Journal of chemical theory and computation, American Chemical Society, volume 14, issue 2, pages 1020-1032, 2018. Y. Peng, L. Sun, Z. Jia, L. Li, and E. Alexov. Predicting protein--DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver. Bioinformatics, Oxford University Press, volume 34, issue 5, pages 779-786, 2018. L. Li, Z. Jia, Y. Peng, S. Godar, I. Getov, S. Teng, J. Alper, and E. Alexov. Forces and Disease: Electrostatic force differences caused by mutations in kinesin motor domains can distinguish between disease-causing and non-disease-causing mutations. Scientific reports, Nature Publishing Group, volume 7, issue 1, pages 1-12, 2017. L. Li, Z. Jia, Y. Peng, A. Chakravorty, L. Sun, and E. Alexov. DelPhiForce web server: electrostatic forces and energy calculations and visualization. Bioinformatics, Oxford University Press, volume 33, issue 22, pages 3661-3663, 2017. Z. Jia, L. Li, A. Chakravorty, and E. Alexov. Treating ion distribution with G aussian-based smooth dielectric function in DelPhi. 2017. L. Hoffman, L. Li, E. Alexov, H. Sanabria, and M. N. Waxham. Cytoskeletal-like Filaments of Ca2+-Calmodulin-Dependent Protein Kinase II Are Formed in a Regulated and Zn2+-Dependent Manner. Biochemistry, American Chemical Society, volume 56, issue 15, pages 2149-2160, 2017. A. Chakravorty, Z. Jia, L. Li, and E. Alexov. A new DelPhi feature for modeling electrostatic potential around proteins: Role of bound ions and implications for zeta-potential. Langmuir, American Chemical Society, volume 33, issue 9, pages 2283-2295, 2017. L. Hoffman, L. Li, E. Alexov, M. N. Waxham, and H. Sanabria. Calcium Calmodulin Regulates Zinc Mediated Changes in the Structure, Self-Association, and Activity of CaMKII. Biophysical Journal, Elsevier, volume 112, issue 3, pages 444a-445a, 2017. L. Li, J. Alper, and E. Alexov. Multi-Scale Investigation on the Mechanisms of Dyneins’ Motion on Microtubule. Biophysical Journal, Elsevier, volume 112, issue 3, pages 261a, 2017. L. Li, A. Chakravorty, and E. Alexov. DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding. Journal of computational chemistry, volume 38, issue 9, pages 584-593, 2017. B. Campbell, L. Li, and E. Alexov. Dielectric Properties of Biological Macromolecules and Biomolecule--Water Interfaces. Encyclopedia of Biocolloid and Biointerface Science 2V Set, John Wiley \& Sons, Inc. Hoboken, NJ, USA, pages 380-390, 2016. A. Chakavorty, L. Li, and E. Alexov. Electrostatic component of binding energy: interpreting predictions from poisson--boltzmann equation and modeling protocols. Journal of computational chemistry, volume 37, issue 28, pages 2495-2507, 2016. L. Li, J. Alper, and E. Alexov. Cytoplasmic dynein binding, run length, and velocity are guided by long-range electrostatic interactions. Scientific reports, Nature Publishing Group, volume 6, issue 1, pages 1-12, 2016. L. Li, J. Alper, and E. Alexov. Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules. Scientific reports, Nature Publishing Group, volume 6, issue 1, pages 1-12, 2016. L. Li, L. Wang, and E. Alexov. On the energy components governing molecular recognition in the framework of continuum approaches. Frontiers in molecular biosciences, Frontiers, volume 2, pages 5, 2015. L. Wang, L. Li, and E. Alexov. pKa predictions for proteins, RNA s, and DNA s with the Gaussian dielectric function using DelPhi pKa. Proteins: Structure, Function, and Bioinformatics, volume 83, issue 12, pages 2186-2197, 2015. T. G. Kucukkal, M. Petukh, L. Li, and E. Alexov. Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins. Current opinion in structural biology, Elsevier Current Trends, volume 32, pages 18-24, 2015. L. Li, N. Smith, and E. Alexov. Modeling ensemble-averaged electrostatics with smooth Gaussian-based dielectric function. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 248, 2014. P. Nedumpully-Govindan, L. Li, E. G. Alexov, M. A. Blenner, and F. Ding. Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity. Bioinformatics, Oxford University Press, volume 30, issue 16, pages 2302-2309, 2014. R. P. Dias, L. Li, T. A. Soares, and E. Alexov. Modeling the electrostatic potential of asymmetric lipopolysaccharide membranes: the MEMPOT algorithm implemented in DelPhi. Journal of computational chemistry, volume 35, issue 19, pages 1418-1429, 2014. L. Li, C. Li, and E. Alexov. On the modeling of polar component of solvation energy using smooth Gaussian-based dielectric function. Journal of Theoretical and Computational Chemistry, World Scientific Publishing Company, volume 13, issue 3, pages 1440002, 2014. L. Li, C. Li, and E. Alexov. Smooth dielectric function for modeling electrostatics in biological macromolecules. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 246, 2013. C. Li, M. Petukh, L. Li, and E. Alexov. Multi-Level and Interleaved Poisson-Boltzmann (MLIPB) Method for Parallel Computing of the Electrostatics and its Application in Delphi. Biophysical Journal, Elsevier, volume 104, issue 2, pages 507a, 2013. L. Li, C. Li, and E. Alexov. Modeling Proteins and Small Molecules with Inhomogeneous Dielectric Function: Implementation in Delphi. Biophysical Journal, Elsevier, volume 104, issue 2, pages 35a, 2013. C. Li, M. Petukh, L. Li, and E. Alexov. Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi. Journal of computational chemistry, Wiley Online Library, volume 34, issue 22, pages 1949-1960, 2013. L. Wang, S. Witham, Z. Zhang, L. Li, M. E. Hodsdon, and E. Alexov. In silico investigation of pH-dependence of prolactin and human growth hormone binding to human prolactin receptor. Communications in computational physics, NIH Public Access, volume 13, issue 1, pages 207, 2013. C. Li, L. Li, M. Petukh, and E. Alexov. Progress in developing Poisson-Boltzmann equation solvers. Computational and Mathematical Biophysics, De Gruyter, volume 1, issue 1, pages 42-62, 2013. L. Li, C. Li, Z. Zhang, and E. Alexov. On the dielectric “constant” of proteins: smooth dielectric function for macromolecular modeling and its implementation in DelPhi. Journal of chemical theory and computation, American Chemical Society, volume 9, issue 4, pages 2126-2136, 2013. C. Li, L. Li, and E. Alexov. Parallelized DelPhi: A multiprocessor Poisson-Boltzmann solver to calculate electrostatic energies of biological macromolecules. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 244, 2012. C. Li, M. Zhenirovskyy, L. Li, and E. Alexov. New Parallelized DelPhi: Fast and Efficient Poisson-Boltzmann Solver to Calculate Electrostatics of Large Supramolecular Structures. Biophysical Journal, Elsevier, volume 102, issue 3, pages 270a, 2012. L. Li, L. Wang, C. Li, and E. Alexov. Effect of non-uniform protein dielectric constant on the electrostatic energy calculations. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 244, 2012. N. Smith, B. Campbell, L. Li, C. Li, and E. Alexov. Protein Nano-Object Integrator (ProNOI) for generating atomic style objects for molecular modeling. BMC structural biology, BioMed Central, volume 12, issue 1, pages 1-10, 2012. M. Petukh, M. Zhenirovskyy, C. Li, L. Li, L. Wang, and E. Alexov. Predicting nonspecific ion binding using DelPhi. Biophysical journal, Elsevier, volume 102, issue 12, pages 2885-2893, 2012. C. Li, L. Li, J. Zhang, and E. Alexov. Highly efficient and exact method for parallelization of grid-based algorithms and its implementation in DelPhi. Journal of computational chemistry, Wiley Online Library, volume 33, issue 24, pages 1960-1966, 2012. N. Smith, S. Witham, S. Sarkar, J. Zhang, L. Li, C. Li, and E. Alexov. DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol. Bioinformatics, Oxford University Press, volume 28, issue 12, pages 1655-1657, 2012. L. Li, C. Li, S. Sarkar, J. Zhang, S. Witham, Z. Zhang, L. Wang, N. Smith, M. Petukh, and E. Alexov. DelPhi: a comprehensive suite for DelPhi software and associated resources. BMC biophysics, BioMed Central, volume 5, issue 1, pages 1-11, 2012.